RNA–Protein interactions for RNA: ENST00000314355.6

CKS2-201, Transcript of CDC28 protein kinase regulatory subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS2, Length 613 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2-201ENST00000314355 AKAP4Q5JQC9 854 aa17.1■□□□□ 0.33
CKS2-201ENST00000314355 AEBP1Q8IUX7 1158 aa17.1■□□□□ 0.33
CKS2-201ENST00000314355 TRAPPC3LQ5T215 181 aa17.09■□□□□ 0.33
CKS2-201ENST00000314355 CFAP53Q96M91 514 aa17.09■□□□□ 0.33
CKS2-201ENST00000314355 RTCBQ9Y3I0 505 aaKnown RBP17.09■□□□□ 0.33
CKS2-201ENST00000314355 QSER1Q2KHR3 1735 aa17.09■□□□□ 0.33
CKS2-201ENST00000314355 HMOX1P09601 288 aa17.08■□□□□ 0.32
CKS2-201ENST00000314355 NFATC2IPQ8NCF5 419 aa17.08■□□□□ 0.32
CKS2-201ENST00000314355 LINC00116Q8NCU8 138 aa17.08■□□□□ 0.32
CKS2-201ENST00000314355 ITGB4P16144 1822 aa17.07■□□□□ 0.32
CKS2-201ENST00000314355 U2SURPO15042 1029 aaKnown RBP17.07■□□□□ 0.32
CKS2-201ENST00000314355 GRIN3BO60391 1043 aa17.07■□□□□ 0.32
CKS2-201ENST00000314355 RC3H1Q5TC82 1133 aaKnown RBP17.06■□□□□ 0.32
CKS2-201ENST00000314355 NUDCQ9Y266 331 aa17.06■□□□□ 0.32
CKS2-201ENST00000314355 CD2APQ9Y5K6 639 aa17.06■□□□□ 0.32
CKS2-201ENST00000314355 KDRP35968 1356 aa17.05■□□□□ 0.32
CKS2-201ENST00000314355 NPC1L1Q9UHC9 1359 aa17.05■□□□□ 0.32
CKS2-201ENST00000314355 C5P01031 1676 aa17.05■□□□□ 0.32
CKS2-201ENST00000314355 PTCD1O75127 700 aaKnown RBP17.05■□□□□ 0.32
CKS2-201ENST00000314355 ITPK1Q13572 414 aa17.05■□□□□ 0.32
CKS2-201ENST00000314355 ADRA2BP18089 450 aa17.04■□□□□ 0.32
CKS2-201ENST00000314355 RFC4P35249 363 aa17.04■□□□□ 0.32
CKS2-201ENST00000314355 NLGN1Q8N2Q7 840 aa17.04■□□□□ 0.32
CKS2-201ENST00000314355 C4BP0C0L5 1744 aa17.03■□□□□ 0.32
CKS2-201ENST00000314355 TOGARAM1Q9Y4F4 1720 aa17.03■□□□□ 0.32
CKS2-201ENST00000314355 SLC52A2Q9HAB3 445 aa17.02■□□□□ 0.32
CKS2-201ENST00000314355 RNMTO43148 476 aaKnown RBP17.01■□□□□ 0.31
CKS2-201ENST00000314355 RPS6KA4O75676 772 aa17.01■□□□□ 0.31
CKS2-201ENST00000314355 NLGN2Q8NFZ4 835 aa17.01■□□□□ 0.31
CKS2-201ENST00000314355 GAS2L2Q8NHY3 880 aa17.01■□□□□ 0.31
CKS2-201ENST00000314355 MTHFSDQ2M296 383 aaKnown RBP17■□□□□ 0.31
CKS2-201ENST00000314355 SMIM5Q71RC9 77 aa17■□□□□ 0.31
CKS2-201ENST00000314355 TTC5Q8N0Z6 440 aa17■□□□□ 0.31
CKS2-201ENST00000314355 TAF1LQ8IZX4 1826 aa17■□□□□ 0.31
CKS2-201ENST00000314355 CNTNAP4Q9C0A0 1308 aa16.99■□□□□ 0.31
CKS2-201ENST00000314355 KDM6AO15550 1401 aaPredicted RBP16.99■□□□□ 0.31
CKS2-201ENST00000314355 ARHGEF1Q92888 912 aaKnown RBP16.99■□□□□ 0.31
CKS2-201ENST00000314355 LGR6Q9HBX8 967 aa16.99■□□□□ 0.31
CKS2-201ENST00000314355 TUBGCP6Q96RT7 1819 aa16.98■□□□□ 0.31
CKS2-201ENST00000314355 NEFMP07197 916 aa16.98■□□□□ 0.31
CKS2-201ENST00000314355 TEFQ10587 303 aa16.98■□□□□ 0.31
CKS2-201ENST00000314355 PARP3Q9Y6F1 533 aa16.98■□□□□ 0.31
CKS2-201ENST00000314355 GNAT3A8MTJ3 354 aa16.97■□□□□ 0.31
CKS2-201ENST00000314355 MMP10P09238 476 aa16.97■□□□□ 0.31
CKS2-201ENST00000314355 CRKLP46109 303 aaKnown RBP16.97■□□□□ 0.31
CKS2-201ENST00000314355 AMIGO3Q86WK7 504 aa16.97■□□□□ 0.31
CKS2-201ENST00000314355 SLC4A9Q96Q91 983 aa16.97■□□□□ 0.31
CKS2-201ENST00000314355 ZPR1O75312 459 aa16.96■□□□□ 0.31
CKS2-201ENST00000314355 NPM2Q86SE8 214 aaKnown RBP16.96■□□□□ 0.31
CKS2-201ENST00000314355 ZNF784Q8NCA9 323 aaPredicted RBP16.96■□□□□ 0.31
CKS2-201ENST00000314355 CCDC87Q9NVE4 849 aa16.96■□□□□ 0.31
CKS2-201ENST00000314355 U2AF1L5P0DN76 240 aaPredicted RBP16.95■□□□□ 0.3
CKS2-201ENST00000314355 U2AF1Q01081 240 aaKnown RBP eCLIP16.95■□□□□ 0.3
CKS2-201ENST00000314355 COL24A1Q17RW2 1714 aa16.94■□□□□ 0.3
CKS2-201ENST00000314355 SLC39A6Q13433 755 aa16.94■□□□□ 0.3
CKS2-201ENST00000314355 RTF1Q92541 710 aaKnown RBP16.94■□□□□ 0.3
CKS2-201ENST00000314355 STARD3NLO95772 234 aa16.93■□□□□ 0.3
CKS2-201ENST00000314355 TGFB2P61812 414 aa16.93■□□□□ 0.3
CKS2-201ENST00000314355 VSIG10Q8N0Z9 540 aa16.93■□□□□ 0.3
CKS2-201ENST00000314355 TEX13AQ9BXU3 409 aaPredicted RBP16.93■□□□□ 0.3
CKS2-201ENST00000314355 UBR3Q6ZT12 1888 aa16.93■□□□□ 0.3
CKS2-201ENST00000314355 GYS1P13807 737 aa16.92■□□□□ 0.3
CKS2-201ENST00000314355 PPP2R1AP30153 589 aa16.92■□□□□ 0.3
CKS2-201ENST00000314355 PRKAR2BP31323 418 aa16.92■□□□□ 0.3
CKS2-201ENST00000314355 DNAJC10Q8IXB1 793 aa16.92■□□□□ 0.3
CKS2-201ENST00000314355 FCHSD2O94868 740 aa16.91■□□□□ 0.3
CKS2-201ENST00000314355 YBX3P16989 372 aaKnown RBP eCLIP16.91■□□□□ 0.3
CKS2-201ENST00000314355 PNNQ9H307 717 aaKnown RBP16.91■□□□□ 0.3
CKS2-201ENST00000314355 CHD4Q14839 1912 aa16.91■□□□□ 0.3
CKS2-201ENST00000314355 ZNF831Q5JPB2 1677 aa16.9■□□□□ 0.3
CKS2-201ENST00000314355 A0A087WZG4 1122 aa16.89■□□□□ 0.29
CKS2-201ENST00000314355 INTS5Q6P9B9 1019 aaKnown RBP16.89■□□□□ 0.29
CKS2-201ENST00000314355 SCN11AQ9UI33 1791 aa16.88■□□□□ 0.29
CKS2-201ENST00000314355 BTBD11A6QL63 1104 aa16.88■□□□□ 0.29
CKS2-201ENST00000314355 CYP19A1P11511 503 aaPredicted RBP16.88■□□□□ 0.29
CKS2-201ENST00000314355 ZNF790Q6PG37 636 aa16.88■□□□□ 0.29
CKS2-201ENST00000314355 IL17REQ8NFR9 667 aa16.88■□□□□ 0.29
CKS2-201ENST00000314355 FMNL2Q96PY5 1086 aa16.88■□□□□ 0.29
CKS2-201ENST00000314355 WWC3Q9ULE0 1092 aa16.88■□□□□ 0.29
CKS2-201ENST00000314355 CANXP27824 592 aaKnown RBP16.87■□□□□ 0.29
CKS2-201ENST00000314355 RSPH6AQ9H0K4 717 aa16.87■□□□□ 0.29
CKS2-201ENST00000314355 BCS1LQ9Y276 419 aa16.87■□□□□ 0.29
CKS2-201ENST00000314355 USP42Q9H9J4 1324 aaKnown RBP16.87■□□□□ 0.29
CKS2-201ENST00000314355 USPL1Q5W0Q7 1092 aa16.86■□□□□ 0.29
CKS2-201ENST00000314355 PHACTR3Q96KR7 559 aa16.86■□□□□ 0.29
CKS2-201ENST00000314355 SRP68Q9UHB9 627 aaKnown RBP16.86■□□□□ 0.29
CKS2-201ENST00000314355 A0A0G2JLW4 131 aa16.85■□□□□ 0.29
CKS2-201ENST00000314355 HTATSF1O43719 755 aaKnown RBP16.85■□□□□ 0.29
CKS2-201ENST00000314355 GIGYF1O75420 1035 aaPredicted RBP16.85■□□□□ 0.29
CKS2-201ENST00000314355 FKBP8Q14318 412 aa16.85■□□□□ 0.29
CKS2-201ENST00000314355 NARFQ9UHQ1 456 aa16.85■□□□□ 0.29
CKS2-201ENST00000314355 PIM2Q9P1W9 311 aa16.84■□□□□ 0.29
CKS2-201ENST00000314355 ZBTB1Q9Y2K1 713 aa16.84■□□□□ 0.29
CKS2-201ENST00000314355 ZNF330Q9Y3S2 320 aaPredicted RBP16.84■□□□□ 0.29
CKS2-201ENST00000314355 SOS1Q07889 1333 aaPredicted RBP16.84■□□□□ 0.29
CKS2-201ENST00000314355 COL3A1P02461 1466 aaPredicted RBP16.84■□□□□ 0.29
CKS2-201ENST00000314355 ZNF496Q96IT1 587 aaPredicted RBP16.83■□□□□ 0.28
CKS2-201ENST00000314355 MRC1P22897 1456 aa16.82■□□□□ 0.28
CKS2-201ENST00000314355 HEG1Q9ULI3 1381 aa16.82■□□□□ 0.28
CKS2-201ENST00000314355 DPEP1P16444 411 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms