RNA–Protein interactions for RNA: ENST00000305866.9

VPS50-202, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS50, Length 3,613 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-202ENST00000305866 RGPD5Q99666 1765 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 SCN11AQ9UI33 1791 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 C4AP0C0L4 1744 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 C4BP0C0L5 1744 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 NEUROD2Q15784 382 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 KRT24Q2M2I5 525 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 TMEM87AQ8NBN3 555 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 PAPPAQ13219 1627 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 JCADQ9P266 1359 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 BRD1O95696 1058 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 PRIM1P49642 420 aaKnown RBP6.78□□□□□ -1.32
VPS50-202ENST00000305866 ZSCAN30Q86W11 494 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 CEMIPQ8WUJ3 1361 aa6.78□□□□□ -1.32
VPS50-202ENST00000305866 TPM2P07951 284 aa6.77□□□□□ -1.32
VPS50-202ENST00000305866 ST3GAL1Q11201 340 aa6.77□□□□□ -1.32
VPS50-202ENST00000305866 HEG1Q9ULI3 1381 aa6.77□□□□□ -1.33
VPS50-202ENST00000305866 TNNT2P45379 298 aaPredicted RBP6.77□□□□□ -1.33
VPS50-202ENST00000305866 SRPK2P78362 688 aaKnown RBP6.77□□□□□ -1.33
VPS50-202ENST00000305866 FAM69CQ0P6D2 419 aa6.77□□□□□ -1.33
VPS50-202ENST00000305866 PDCL3Q9H2J4 239 aa6.77□□□□□ -1.33
VPS50-202ENST00000305866 C1orf115Q9H7X2 142 aa6.77□□□□□ -1.33
VPS50-202ENST00000305866 NHSL1Q5SYE7 1610 aa6.77□□□□□ -1.33
VPS50-202ENST00000305866 MINK1Q8N4C8 1332 aaPredicted RBP6.77□□□□□ -1.33
VPS50-202ENST00000305866 TMEM94Q12767 1356 aa6.77□□□□□ -1.33
VPS50-202ENST00000305866 SKOR2Q2VWA4 1001 aaPredicted RBP6.77□□□□□ -1.33
VPS50-202ENST00000305866 ITPRIPQ8IWB1 547 aa6.77□□□□□ -1.33
VPS50-202ENST00000305866 THUMPD2Q9BTF0 503 aaKnown RBP6.77□□□□□ -1.33
VPS50-202ENST00000305866 SDSP20132 328 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 HAP1P54257 671 aaPredicted RBP6.76□□□□□ -1.33
VPS50-202ENST00000305866 UBR2Q8IWV8 1755 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 FLT4P35916 1363 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 PRKAR2BP31323 418 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 SPTLC3Q9NUV7 552 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 ZRANB1Q9UGI0 708 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.76□□□□□ -1.33
VPS50-202ENST00000305866 ARFGEF2Q9Y6D5 1785 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 KCNB2Q92953 911 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 PKNOX2Q96KN3 472 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 SHANK3Q9BYB0 1731 aa6.76□□□□□ -1.33
VPS50-202ENST00000305866 API5Q9BZZ5 524 aaKnown RBP6.76□□□□□ -1.33
VPS50-202ENST00000305866 TTC14Q96N46 770 aa6.75□□□□□ -1.33
VPS50-202ENST00000305866 PALD1Q9ULE6 856 aa6.75□□□□□ -1.33
VPS50-202ENST00000305866 AOX1Q06278 1338 aa6.75□□□□□ -1.33
VPS50-202ENST00000305866 EIF4A2Q14240 407 aaKnown RBP6.75□□□□□ -1.33
VPS50-202ENST00000305866 WAPLQ7Z5K2 1190 aa6.75□□□□□ -1.33
VPS50-202ENST00000305866 JARID2Q92833 1246 aaPredicted RBP6.75□□□□□ -1.33
VPS50-202ENST00000305866 FAM53CQ9NYF3 392 aa6.75□□□□□ -1.33
VPS50-202ENST00000305866 LRSAM1Q6UWE0 723 aa6.75□□□□□ -1.33
VPS50-202ENST00000305866 RPAP2Q8IXW5 612 aaPredicted RBP6.75□□□□□ -1.33
VPS50-202ENST00000305866 RBM27Q9P2N5 1060 aaKnown RBP6.75□□□□□ -1.33
VPS50-202ENST00000305866 STAP2Q9UGK3 403 aa6.75□□□□□ -1.33
VPS50-202ENST00000305866 ZKSCAN5Q9Y2L8 839 aa6.75□□□□□ -1.33
VPS50-202ENST00000305866 FAM83GA6ND36 823 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 CDC45O75419 566 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 ZSCAN20P17040 1043 aaPredicted RBP6.74□□□□□ -1.33
VPS50-202ENST00000305866 COL9A3Q14050 684 aaPredicted RBP6.74□□□□□ -1.33
VPS50-202ENST00000305866 KIAA1211Q6ZU35 1233 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 HSCBQ8IWL3 235 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 EMILIN1Q9Y6C2 1016 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 ERBB3P21860 1342 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 ADCY9O60503 1353 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 USP42Q9H9J4 1324 aaKnown RBP6.74□□□□□ -1.33
VPS50-202ENST00000305866 AFDNP55196 1824 aaKnown RBP6.74□□□□□ -1.33
VPS50-202ENST00000305866 CHGAP10645 457 aaKnown RBP6.74□□□□□ -1.33
VPS50-202ENST00000305866 PTMSP20962 102 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 RABEP1Q15276 862 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 NME9Q86XW9 330 aa6.74□□□□□ -1.33
VPS50-202ENST00000305866 NASPP49321 788 aaPredicted RBP6.73□□□□□ -1.33
VPS50-202ENST00000305866 KCNF1Q9H3M0 494 aa6.73□□□□□ -1.33
VPS50-202ENST00000305866 COL15A1P39059 1388 aa6.73□□□□□ -1.33
VPS50-202ENST00000305866 SPEF2Q9C093 1822 aa6.73□□□□□ -1.33
VPS50-202ENST00000305866 LTKP29376 864 aa6.73□□□□□ -1.33
VPS50-202ENST00000305866 CASZ1Q86V15 1759 aa6.73□□□□□ -1.33
VPS50-202ENST00000305866 NPHP4O75161 1426 aaPredicted RBP6.73□□□□□ -1.33
VPS50-202ENST00000305866 COG3Q96JB2 828 aa6.72□□□□□ -1.33
VPS50-202ENST00000305866 SNRKQ9NRH2 765 aa6.72□□□□□ -1.33
VPS50-202ENST00000305866 ACEP12821 1306 aa6.72□□□□□ -1.33
VPS50-202ENST00000305866 HOXB7P09629 217 aa6.72□□□□□ -1.33
VPS50-202ENST00000305866 UNC5CLQ8IV45 518 aa6.72□□□□□ -1.33
VPS50-202ENST00000305866 FTSJ3Q8IY81 847 aaKnown RBP6.72□□□□□ -1.33
VPS50-202ENST00000305866 CICQ96RK0 1608 aaPredicted RBP6.72□□□□□ -1.33
VPS50-202ENST00000305866 MCM5P33992 734 aa6.72□□□□□ -1.33
VPS50-202ENST00000305866 ANKRD45Q5TZF3 282 aa6.72□□□□□ -1.33
VPS50-202ENST00000305866 NCKAP5LQ9HCH0 1330 aa6.71□□□□□ -1.33
VPS50-202ENST00000305866 HSP90AA2PQ14568 343 aaPredicted RBP6.71□□□□□ -1.33
VPS50-202ENST00000305866 TWISTNBQ3B726 338 aaPredicted RBP6.71□□□□□ -1.33
VPS50-202ENST00000305866 UPF2Q9HAU5 1272 aaKnown RBP6.71□□□□□ -1.33
VPS50-202ENST00000305866 MYH7P12883 1935 aa6.71□□□□□ -1.33
VPS50-202ENST00000305866 CTIFO43310 598 aaKnown RBP6.71□□□□□ -1.34
VPS50-202ENST00000305866 GADD45BO75293 160 aaPredicted RBP6.71□□□□□ -1.34
VPS50-202ENST00000305866 ANKRD7Q92527 254 aa6.71□□□□□ -1.34
VPS50-202ENST00000305866 MEIS3Q99687 375 aa6.71□□□□□ -1.34
VPS50-202ENST00000305866 CWC22Q9HCG8 908 aaKnown RBP6.71□□□□□ -1.34
VPS50-202ENST00000305866 PI4K2BQ8TCG2 481 aa6.71□□□□□ -1.34
VPS50-202ENST00000305866 INTS4Q96HW7 963 aaKnown RBP6.71□□□□□ -1.34
VPS50-202ENST00000305866 DAXXQ9UER7 740 aaPredicted RBP6.71□□□□□ -1.34
VPS50-202ENST00000305866 DCCP43146 1447 aa6.71□□□□□ -1.34
VPS50-202ENST00000305866 G2E3Q7L622 706 aa6.7□□□□□ -1.34
VPS50-202ENST00000305866 AEBP1Q8IUX7 1158 aa6.7□□□□□ -1.34
VPS50-202ENST00000305866 GBP4Q96PP9 640 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms