RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 TONSLQ96HA7 1378 aa13.11□□□□□ -0.31
CNOT9-202ENST00000295701 MKRN3Q13064 507 aaKnown RBP13.11□□□□□ -0.31
CNOT9-202ENST00000295701 CHD4Q14839 1912 aa13.1□□□□□ -0.31
CNOT9-202ENST00000295701 HOXC9P31274 260 aa13.1□□□□□ -0.31
CNOT9-202ENST00000295701 PUS7Q96PZ0 661 aaKnown RBP13.1□□□□□ -0.31
CNOT9-202ENST00000295701 ARXQ96QS3 562 aa13.1□□□□□ -0.31
CNOT9-202ENST00000295701 TUBGCP6Q96RT7 1819 aa13.1□□□□□ -0.31
CNOT9-202ENST00000295701 AMPHP49418 695 aa13.09□□□□□ -0.31
CNOT9-202ENST00000295701 PRIM1P49642 420 aaKnown RBP13.09□□□□□ -0.31
CNOT9-202ENST00000295701 SYTL4Q96C24 671 aaPredicted RBP13.09□□□□□ -0.31
CNOT9-202ENST00000295701 COG3Q96JB2 828 aa13.09□□□□□ -0.31
CNOT9-202ENST00000295701 SHANK3Q9BYB0 1731 aa13.09□□□□□ -0.31
CNOT9-202ENST00000295701 FAM208AQ9UK61 1670 aaKnown RBP13.08□□□□□ -0.31
CNOT9-202ENST00000295701 RRS1Q15050 365 aaKnown RBP13.08□□□□□ -0.32
CNOT9-202ENST00000295701 USHBP1Q8N6Y0 703 aa13.08□□□□□ -0.32
CNOT9-202ENST00000295701 ZNF784Q8NCA9 323 aaPredicted RBP13.08□□□□□ -0.32
CNOT9-202ENST00000295701 DOT1LQ8TEK3 1739 aa13.08□□□□□ -0.32
CNOT9-202ENST00000295701 GGNBP2Q9H3C7 697 aa13.07□□□□□ -0.32
CNOT9-202ENST00000295701 PNPLA7Q6ZV29 1317 aa13.07□□□□□ -0.32
CNOT9-202ENST00000295701 NBPF6Q5VWK0 638 aa13.06□□□□□ -0.32
CNOT9-202ENST00000295701 ZCRB1Q8TBF4 217 aaKnown RBP13.06□□□□□ -0.32
CNOT9-202ENST00000295701 NBPF4Q96M43 638 aa13.06□□□□□ -0.32
CNOT9-202ENST00000295701 MEGF6O75095 1541 aa13.06□□□□□ -0.32
CNOT9-202ENST00000295701 NSD2O96028 1365 aa13.06□□□□□ -0.32
CNOT9-202ENST00000295701 LY75O60449 1722 aa13.05□□□□□ -0.32
CNOT9-202ENST00000295701 QSER1Q2KHR3 1735 aa13.05□□□□□ -0.32
CNOT9-202ENST00000295701 FYB1O15117 783 aa13.05□□□□□ -0.32
CNOT9-202ENST00000295701 SLC27A3Q5K4L6 730 aa13.05□□□□□ -0.32
CNOT9-202ENST00000295701 GOLGB1Q14789 3259 aaKnown RBP13.04□□□□□ -0.32
CNOT9-202ENST00000295701 TFCP2L1Q9NZI6 479 aa13.04□□□□□ -0.32
CNOT9-202ENST00000295701 ANKRD36BQ8N2N9 1353 aa13.04□□□□□ -0.32
CNOT9-202ENST00000295701 COL24A1Q17RW2 1714 aa13.03□□□□□ -0.32
CNOT9-202ENST00000295701 PDCD7Q8N8D1 485 aaKnown RBP13.03□□□□□ -0.32
CNOT9-202ENST00000295701 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.03□□□□□ -0.322e-7■□□□□ 10.3
CNOT9-202ENST00000295701 GPR162Q16538 588 aa13.02□□□□□ -0.33
CNOT9-202ENST00000295701 HSP90AB2PQ58FF8 381 aa13.02□□□□□ -0.33
CNOT9-202ENST00000295701 NLGN2Q8NFZ4 835 aa13.02□□□□□ -0.33
CNOT9-202ENST00000295701 SLC16A10Q8TF71 515 aa13.02□□□□□ -0.33
CNOT9-202ENST00000295701 CCNL1Q9UK58 526 aaPredicted RBP13.01□□□□□ -0.33
CNOT9-202ENST00000295701 MAP3K5Q99683 1374 aa13.01□□□□□ -0.33
CNOT9-202ENST00000295701 RIOK3O14730 519 aaKnown RBP13□□□□□ -0.33
CNOT9-202ENST00000295701 POLD1P28340 1107 aa13□□□□□ -0.33
CNOT9-202ENST00000295701 COL23A1Q86Y22 540 aaPredicted RBP13□□□□□ -0.33
CNOT9-202ENST00000295701 SLAIN1Q8ND83 568 aa13□□□□□ -0.33
CNOT9-202ENST00000295701 USP47Q96K76 1375 aa12.99□□□□□ -0.33
CNOT9-202ENST00000295701 TMF1P82094 1093 aa12.99□□□□□ -0.33
CNOT9-202ENST00000295701 MSL1Q68DK7 614 aa12.99□□□□□ -0.33
CNOT9-202ENST00000295701 RNF25Q96BH1 459 aaPredicted RBP12.99□□□□□ -0.33
CNOT9-202ENST00000295701 CARD14Q9BXL6 1004 aa12.99□□□□□ -0.33
CNOT9-202ENST00000295701 KIF20BQ96Q89 1820 aa12.99□□□□□ -0.33
CNOT9-202ENST00000295701 RTL1A6NKG5 1358 aa12.98□□□□□ -0.33
CNOT9-202ENST00000295701 ITGB4P16144 1822 aa12.98□□□□□ -0.33
CNOT9-202ENST00000295701 TATP17735 454 aaPredicted RBP12.98□□□□□ -0.33
CNOT9-202ENST00000295701 SMIM5Q71RC9 77 aa12.98□□□□□ -0.33
CNOT9-202ENST00000295701 RAPGEF4Q8WZA2 1011 aa12.98□□□□□ -0.33
CNOT9-202ENST00000295701 TAF1LQ8IZX4 1826 aa12.97□□□□□ -0.33
CNOT9-202ENST00000295701 CYP27B1O15528 508 aa12.97□□□□□ -0.33
CNOT9-202ENST00000295701 SLC24A1O60721 1099 aa12.97□□□□□ -0.33
CNOT9-202ENST00000295701 FAM163AQ96GL9 167 aaPredicted RBP12.97□□□□□ -0.33
CNOT9-202ENST00000295701 EMILIN1Q9Y6C2 1016 aa12.97□□□□□ -0.33
CNOT9-202ENST00000295701 INSRP06213 1382 aa12.96□□□□□ -0.33
CNOT9-202ENST00000295701 YBX3P16989 372 aaKnown RBP eCLIP12.96□□□□□ -0.339e-6■■■□□ 18.1
CNOT9-202ENST00000295701 MPRIPQ6WCQ1 1025 aa12.96□□□□□ -0.33
CNOT9-202ENST00000295701 TOGARAM1Q9Y4F4 1720 aa12.96□□□□□ -0.34
CNOT9-202ENST00000295701 MAP2P11137 1827 aaKnown RBP12.95□□□□□ -0.34
CNOT9-202ENST00000295701 CGNL1Q0VF96 1302 aa12.95□□□□□ -0.34
CNOT9-202ENST00000295701 C1QTNF8P60827 252 aa12.95□□□□□ -0.34
CNOT9-202ENST00000295701 AMIGO3Q86WK7 504 aa12.95□□□□□ -0.34
CNOT9-202ENST00000295701 L3MBTL3Q96JM7 780 aaPredicted RBP12.95□□□□□ -0.34
CNOT9-202ENST00000295701 C5P01031 1676 aa12.95□□□□□ -0.34
CNOT9-202ENST00000295701 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.94□□□□□ -0.34
CNOT9-202ENST00000295701 SMG6Q86US8 1419 aaKnown RBP12.94□□□□□ -0.34
CNOT9-202ENST00000295701 FLT4P35916 1363 aa12.94□□□□□ -0.34
CNOT9-202ENST00000295701 PCDH11XQ9BZA7 1347 aa12.93□□□□□ -0.34
CNOT9-202ENST00000295701 PCDH11YQ9BZA8 1340 aa12.93□□□□□ -0.34
CNOT9-202ENST00000295701 SENP3-EIF4A1A0A087X0R7 540 aa12.93□□□□□ -0.34
CNOT9-202ENST00000295701 PPM1GO15355 546 aaPredicted RBP12.93□□□□□ -0.34
CNOT9-202ENST00000295701 PIGBQ92521 554 aa12.93□□□□□ -0.34
CNOT9-202ENST00000295701 NSD3Q9BZ95 1437 aa12.93□□□□□ -0.34
CNOT9-202ENST00000295701 PALLDQ8WX93 1383 aa12.93□□□□□ -0.34
CNOT9-202ENST00000295701 POTEMA6NI47 508 aa12.92□□□□□ -0.34
CNOT9-202ENST00000295701 PKD1L3Q7Z443 1732 aa12.91□□□□□ -0.34
CNOT9-202ENST00000295701 POTEGQ6S5H5 508 aa12.91□□□□□ -0.34
CNOT9-202ENST00000295701 EYA1Q99502 592 aa12.91□□□□□ -0.34
CNOT9-202ENST00000295701 WWC3Q9ULE0 1092 aa12.91□□□□□ -0.34
CNOT9-202ENST00000295701 UBR3Q6ZT12 1888 aa12.91□□□□□ -0.34
CNOT9-202ENST00000295701 C4BP0C0L5 1744 aa12.91□□□□□ -0.34
CNOT9-202ENST00000295701 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.9□□□□□ -0.34
CNOT9-202ENST00000295701 PHF14O94880 888 aa12.9□□□□□ -0.34
CNOT9-202ENST00000295701 TRIM26Q12899 539 aaPredicted RBP12.9□□□□□ -0.34
CNOT9-202ENST00000295701 CDCA8Q53HL2 280 aa12.9□□□□□ -0.34
CNOT9-202ENST00000295701 LCE2DQ5TA82 110 aaPredicted RBP12.9□□□□□ -0.34
CNOT9-202ENST00000295701 EFCAB3Q8N7B9 438 aa12.9□□□□□ -0.34
CNOT9-202ENST00000295701 ZFP91Q96JP5 570 aaPredicted RBP12.9□□□□□ -0.34
CNOT9-202ENST00000295701 NKX1-1Q15270 411 aaPredicted RBP12.89□□□□□ -0.35
CNOT9-202ENST00000295701 DPY19L2Q6NUT2 758 aa12.89□□□□□ -0.35
CNOT9-202ENST00000295701 C3orf67Q6ZVT6 689 aa12.89□□□□□ -0.35
CNOT9-202ENST00000295701 POLR3GLQ9BT43 218 aa12.89□□□□□ -0.35
CNOT9-202ENST00000295701 POLKQ9UBT6 870 aa12.89□□□□□ -0.35
CNOT9-202ENST00000295701 KIF24Q5T7B8 1368 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms