RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 ERVV-2B6SEH9 535 aa19.53■□□□□ 0.72
HMGN3-201ENST00000275036 MSH5O43196 834 aa19.53■□□□□ 0.72
HMGN3-201ENST00000275036 MSL1Q68DK7 614 aa19.53■□□□□ 0.72
HMGN3-201ENST00000275036 ZNF831Q5JPB2 1677 aa19.52■□□□□ 0.72
HMGN3-201ENST00000275036 COL5A3P25940 1745 aaPredicted RBP19.52■□□□□ 0.72
HMGN3-201ENST00000275036 DIAPH1O60610 1272 aaKnown RBP19.52■□□□□ 0.72
HMGN3-201ENST00000275036 HMOX1P09601 288 aa19.52■□□□□ 0.72
HMGN3-201ENST00000275036 HSP90AB1P08238 724 aaKnown RBP19.51■□□□□ 0.71
HMGN3-201ENST00000275036 AK7Q96M32 723 aa19.51■□□□□ 0.71
HMGN3-201ENST00000275036 PHF14O94880 888 aa19.5■□□□□ 0.71
HMGN3-201ENST00000275036 POLD1P28340 1107 aa19.5■□□□□ 0.71
HMGN3-201ENST00000275036 ATP6V1AP38606 617 aa19.5■□□□□ 0.71
HMGN3-201ENST00000275036 C1orf141Q5JVX7 400 aa19.49■□□□□ 0.71
HMGN3-201ENST00000275036 NLGN2Q8NFZ4 835 aa19.49■□□□□ 0.71
HMGN3-201ENST00000275036 ADAMTS7Q9UKP4 1686 aa19.49■□□□□ 0.71
HMGN3-201ENST00000275036 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.48■□□□□ 0.71
HMGN3-201ENST00000275036 CABP4P57796 275 aa19.48■□□□□ 0.71
HMGN3-201ENST00000275036 KLHL34Q8N239 644 aa19.48■□□□□ 0.71
HMGN3-201ENST00000275036 TJP1Q07157 1748 aa19.48■□□□□ 0.71
HMGN3-201ENST00000275036 MRC1P22897 1456 aa19.48■□□□□ 0.71
HMGN3-201ENST00000275036 GOLGB1Q14789 3259 aaKnown RBP19.47■□□□□ 0.71
HMGN3-201ENST00000275036 PPP2R1AP30153 589 aa19.46■□□□□ 0.71
HMGN3-201ENST00000275036 AKAP4Q5JQC9 854 aa19.46■□□□□ 0.71
HMGN3-201ENST00000275036 NFATC2IPQ8NCF5 419 aa19.46■□□□□ 0.71
HMGN3-201ENST00000275036 FLAD1Q8NFF5 587 aa19.46■□□□□ 0.71
HMGN3-201ENST00000275036 RBM42Q9BTD8 480 aaKnown RBP19.46■□□□□ 0.71
HMGN3-201ENST00000275036 LGR6Q9HBX8 967 aa19.46■□□□□ 0.71
HMGN3-201ENST00000275036 CICQ96RK0 1608 aaPredicted RBP19.46■□□□□ 0.71
HMGN3-201ENST00000275036 GNPATO15228 680 aa19.45■□□□□ 0.7
HMGN3-201ENST00000275036 YY1P25490 414 aa19.45■□□□□ 0.7
HMGN3-201ENST00000275036 SSFA2P28290 1259 aa19.45■□□□□ 0.7
HMGN3-201ENST00000275036 MTHFSDQ2M296 383 aaKnown RBP19.45■□□□□ 0.7
HMGN3-201ENST00000275036 MYH14Q7Z406 1995 aaKnown RBP19.44■□□□□ 0.7
HMGN3-201ENST00000275036 DCAF8L1A6NGE4 600 aa19.44■□□□□ 0.7
HMGN3-201ENST00000275036 U2SURPO15042 1029 aaKnown RBP19.44■□□□□ 0.7
HMGN3-201ENST00000275036 HMGB2P26583 209 aaKnown RBP19.43■□□□□ 0.7
HMGN3-201ENST00000275036 C4AP0C0L4 1744 aa19.42■□□□□ 0.7
HMGN3-201ENST00000275036 PTCD1O75127 700 aaKnown RBP19.42■□□□□ 0.7
HMGN3-201ENST00000275036 RNMTO43148 476 aaKnown RBP19.41■□□□□ 0.7
HMGN3-201ENST00000275036 SLC52A2Q9HAB3 445 aa19.41■□□□□ 0.7
HMGN3-201ENST00000275036 CNTNAP4Q9C0A0 1308 aa19.41■□□□□ 0.7
HMGN3-201ENST00000275036 KCPQ6ZWJ8 1503 aa19.41■□□□□ 0.7
HMGN3-201ENST00000275036 CFAP53Q96M91 514 aa19.39■□□□□ 0.69
HMGN3-201ENST00000275036 SLC39A6Q13433 755 aa19.38■□□□□ 0.69
HMGN3-201ENST00000275036 RC3H1Q5TC82 1133 aaKnown RBP19.38■□□□□ 0.69
HMGN3-201ENST00000275036 UBR2Q8IWV8 1755 aa19.37■□□□□ 0.69
HMGN3-201ENST00000275036 YBX3P16989 372 aaKnown RBP eCLIP19.37■□□□□ 0.696e-6■□□□□ 10.6
HMGN3-201ENST00000275036 RSPH6AQ9H0K4 717 aa19.37■□□□□ 0.69
HMGN3-201ENST00000275036 RTCBQ9Y3I0 505 aaKnown RBP19.37■□□□□ 0.69
HMGN3-201ENST00000275036 CHD4Q14839 1912 aa19.37■□□□□ 0.69
HMGN3-201ENST00000275036 SIPA1L3O60292 1781 aaPredicted RBP19.37■□□□□ 0.69
HMGN3-201ENST00000275036 RPS6KA4O75676 772 aa19.36■□□□□ 0.69
HMGN3-201ENST00000275036 GPR162Q16538 588 aa19.36■□□□□ 0.69
HMGN3-201ENST00000275036 ARHGEF1Q92888 912 aaKnown RBP19.36■□□□□ 0.69
HMGN3-201ENST00000275036 PHACTR3Q96KR7 559 aa19.36■□□□□ 0.69
HMGN3-201ENST00000275036 KIAA1551Q9HCM1 1747 aa19.35■□□□□ 0.69
HMGN3-201ENST00000275036 PRKAR2BP31323 418 aa19.35■□□□□ 0.69
HMGN3-201ENST00000275036 CRKLP46109 303 aaKnown RBP19.35■□□□□ 0.69
HMGN3-201ENST00000275036 TRAPPC3LQ5T215 181 aa19.35■□□□□ 0.69
HMGN3-201ENST00000275036 PELP1Q8IZL8 1130 aaKnown RBP19.35■□□□□ 0.69
HMGN3-201ENST00000275036 CD2APQ9Y5K6 639 aa19.35■□□□□ 0.69
HMGN3-201ENST00000275036 DDX10Q13206 875 aaKnown RBP19.34■□□□□ 0.69
HMGN3-201ENST00000275036 DNAJC10Q8IXB1 793 aa19.34■□□□□ 0.69
HMGN3-201ENST00000275036 IL17REQ8NFR9 667 aa19.34■□□□□ 0.69
HMGN3-201ENST00000275036 U2AF1L5P0DN76 240 aaPredicted RBP19.33■□□□□ 0.68
HMGN3-201ENST00000275036 GYS1P13807 737 aa19.33■□□□□ 0.68
HMGN3-201ENST00000275036 U2AF1Q01081 240 aaKnown RBP eCLIP19.33■□□□□ 0.687e-10■■■■■ 33.4
HMGN3-201ENST00000275036 INTS5Q6P9B9 1019 aaKnown RBP19.33■□□□□ 0.68
HMGN3-201ENST00000275036 NUDCQ9Y266 331 aa19.33■□□□□ 0.68
HMGN3-201ENST00000275036 KIF13BQ9NQT8 1826 aa19.32■□□□□ 0.68
HMGN3-201ENST00000275036 MMP10P09238 476 aa19.32■□□□□ 0.68
HMGN3-201ENST00000275036 ADRA2BP18089 450 aa19.32■□□□□ 0.68
HMGN3-201ENST00000275036 GAS2L2Q8NHY3 880 aa19.32■□□□□ 0.68
HMGN3-201ENST00000275036 GNAT3A8MTJ3 354 aa19.31■□□□□ 0.68
HMGN3-201ENST00000275036 DLG5Q8TDM6 1919 aa19.31■□□□□ 0.68
HMGN3-201ENST00000275036 SRP68Q9UHB9 627 aaKnown RBP19.3■□□□□ 0.68
HMGN3-201ENST00000275036 CEMIPQ8WUJ3 1361 aa19.3■□□□□ 0.68
HMGN3-201ENST00000275036 CYP19A1P11511 503 aaPredicted RBP19.29■□□□□ 0.68
HMGN3-201ENST00000275036 RFC4P35249 363 aa19.29■□□□□ 0.68
HMGN3-201ENST00000275036 ZNF784Q8NCA9 323 aaPredicted RBP19.29■□□□□ 0.68
HMGN3-201ENST00000275036 WWC3Q9ULE0 1092 aa19.29■□□□□ 0.68
HMGN3-201ENST00000275036 USP42Q9H9J4 1324 aaKnown RBP19.28■□□□□ 0.68
HMGN3-201ENST00000275036 C10orf71Q711Q0 1435 aa19.28■□□□□ 0.68
HMGN3-201ENST00000275036 FCHSD2O94868 740 aa19.28■□□□□ 0.68
HMGN3-201ENST00000275036 CCDC87Q9NVE4 849 aa19.28■□□□□ 0.68
HMGN3-201ENST00000275036 PXDNLA1KZ92 1463 aa19.28■□□□□ 0.68
HMGN3-201ENST00000275036 SOS1Q07889 1333 aaPredicted RBP19.27■□□□□ 0.68
HMGN3-201ENST00000275036 N4BP2Q86UW6 1770 aaPredicted RBP19.27■□□□□ 0.68
HMGN3-201ENST00000275036 NLGN1Q8N2Q7 840 aa19.27■□□□□ 0.68
HMGN3-201ENST00000275036 ZBTB1Q9Y2K1 713 aa19.27■□□□□ 0.68
HMGN3-201ENST00000275036 FKBP8Q14318 412 aa19.26■□□□□ 0.67
HMGN3-201ENST00000275036 RALBP1Q15311 655 aa19.25■□□□□ 0.67
HMGN3-201ENST00000275036 VSIG10Q8N0Z9 540 aa19.25■□□□□ 0.67
HMGN3-201ENST00000275036 ZNF496Q96IT1 587 aaPredicted RBP19.25■□□□□ 0.67
HMGN3-201ENST00000275036 KCNQ3O43525 872 aa19.24■□□□□ 0.67
HMGN3-201ENST00000275036 DDR1Q08345 913 aa19.24■□□□□ 0.67
HMGN3-201ENST00000275036 TEFQ10587 303 aa19.24■□□□□ 0.67
HMGN3-201ENST00000275036 ZNF790Q6PG37 636 aa19.24■□□□□ 0.67
HMGN3-201ENST00000275036 COL15A1P39059 1388 aa19.23■□□□□ 0.67
HMGN3-201ENST00000275036 HEG1Q9ULI3 1381 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms