RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 TNNQ9UQP3 1299 aa29.34■■■□□ 2.29
SMARCB1-201ENST00000263121 SPATA31A6Q5VVP1 1343 aa29.34■■■□□ 2.29
SMARCB1-201ENST00000263121 BTBD11A6QL63 1104 aa29.34■■■□□ 2.29
SMARCB1-201ENST00000263121 PANK1Q8TE04 598 aa29.34■■■□□ 2.29
SMARCB1-201ENST00000263121 B4GALNT3Q6L9W6 998 aa29.32■■■□□ 2.28
SMARCB1-201ENST00000263121 ATF7IPQ6VMQ6 1270 aa29.32■■■□□ 2.28
SMARCB1-201ENST00000263121 IPO8O15397 1037 aaKnown RBP29.31■■■□□ 2.28
SMARCB1-201ENST00000263121 MS4A1P11836 297 aa29.31■■■□□ 2.28
SMARCB1-201ENST00000263121 RLBP1P12271 317 aa29.31■■■□□ 2.28
SMARCB1-201ENST00000263121 TRIM27P14373 513 aa29.31■■■□□ 2.28
SMARCB1-201ENST00000263121 SLC52A2Q9HAB3 445 aa29.31■■■□□ 2.28
SMARCB1-201ENST00000263121 EIF4A1P60842 406 aaKnown RBP29.31■■■□□ 2.28
SMARCB1-201ENST00000263121 HSPA1LP34931 641 aa29.3■■■□□ 2.28
SMARCB1-201ENST00000263121 NKX1-1Q15270 411 aaPredicted RBP29.3■■■□□ 2.28
SMARCB1-201ENST00000263121 LRP6O75581 1613 aa29.29■■■□□ 2.28
SMARCB1-201ENST00000263121 TCERG1O14776 1098 aaKnown RBP29.29■■■□□ 2.28
SMARCB1-201ENST00000263121 DZIP1LQ8IYY4 767 aaKnown RBP29.29■■■□□ 2.28
SMARCB1-201ENST00000263121 ARHGAP45Q92619 1136 aa29.29■■■□□ 2.28
SMARCB1-201ENST00000263121 SPATA31A1Q5TZJ5 1347 aa29.28■■■□□ 2.28
SMARCB1-201ENST00000263121 KCNQ3O43525 872 aa29.28■■■□□ 2.28
SMARCB1-201ENST00000263121 CCDC136Q96JN2 1154 aa29.28■■■□□ 2.28
SMARCB1-201ENST00000263121 COG6Q9Y2V7 657 aa29.28■■■□□ 2.28
SMARCB1-201ENST00000263121 CLUAP1Q96AJ1 413 aa29.27■■■□□ 2.28
SMARCB1-201ENST00000263121 THRAP3Q9Y2W1 955 aaKnown RBP29.26■■■□□ 2.27
SMARCB1-201ENST00000263121 HOXB7P09629 217 aa29.25■■■□□ 2.27
SMARCB1-201ENST00000263121 FTSJ3Q8IY81 847 aaKnown RBP29.25■■■□□ 2.27
SMARCB1-201ENST00000263121 HEG1Q9ULI3 1381 aa29.25■■■□□ 2.27
SMARCB1-201ENST00000263121 SPATA31A5Q5VU36 1347 aa29.25■■■□□ 2.27
SMARCB1-201ENST00000263121 SPATA31A7Q8IWB4 1347 aa29.25■■■□□ 2.27
SMARCB1-201ENST00000263121 NFATC2IPQ8NCF5 419 aa29.25■■■□□ 2.27
SMARCB1-201ENST00000263121 DDX54Q8TDD1 881 aaKnown RBP29.23■■■□□ 2.27
SMARCB1-201ENST00000263121 BCL9LQ86UU0 1499 aa29.23■■■□□ 2.27
SMARCB1-201ENST00000263121 MVPQ14764 893 aaKnown RBP29.22■■■□□ 2.27
SMARCB1-201ENST00000263121 UNC5CLQ8IV45 518 aa29.22■■■□□ 2.27
SMARCB1-201ENST00000263121 C8orf37Q96NL8 207 aa29.22■■■□□ 2.27
SMARCB1-201ENST00000263121 CDCA7Q9BWT1 371 aaPredicted RBP29.22■■■□□ 2.27
SMARCB1-201ENST00000263121 CCDC30Q5VVM6 783 aa29.21■■■□□ 2.27
SMARCB1-201ENST00000263121 TNS2Q63HR2 1409 aa29.21■■■□□ 2.27
SMARCB1-201ENST00000263121 ERVV-2B6SEH9 535 aa29.21■■■□□ 2.27
SMARCB1-201ENST00000263121 CABP4P57796 275 aa29.21■■■□□ 2.27
SMARCB1-201ENST00000263121 FNBP4Q8N3X1 1017 aaPredicted RBP29.21■■■□□ 2.27
SMARCB1-201ENST00000263121 NGLY1Q96IV0 654 aa29.21■■■□□ 2.27
SMARCB1-201ENST00000263121 TOGARAM1Q9Y4F4 1720 aa29.21■■■□□ 2.27
SMARCB1-201ENST00000263121 ZNF790Q6PG37 636 aa29.2■■■□□ 2.26
SMARCB1-201ENST00000263121 API5Q9BZZ5 524 aaKnown RBP29.19■■■□□ 2.26
SMARCB1-201ENST00000263121 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.19■■■□□ 2.26
SMARCB1-201ENST00000263121 SLC4A2P04920 1241 aa29.18■■■□□ 2.26
SMARCB1-201ENST00000263121 AAMPQ13685 434 aa29.18■■■□□ 2.26
SMARCB1-201ENST00000263121 ABCC4O15439 1325 aa29.18■■■□□ 2.26
SMARCB1-201ENST00000263121 CACNA1FO60840 1977 aa29.18■■■□□ 2.26
SMARCB1-201ENST00000263121 STK31Q9BXU1 1019 aa29.18■■■□□ 2.26
SMARCB1-201ENST00000263121 PTPRCP08575 1304 aa29.17■■■□□ 2.26
SMARCB1-201ENST00000263121 RGS12O14924 1447 aa29.17■■■□□ 2.26
SMARCB1-201ENST00000263121 HDGFL1Q5TGJ6 251 aa29.17■■■□□ 2.26
SMARCB1-201ENST00000263121 BARGINQ6ZT62 677 aa29.17■■■□□ 2.26
SMARCB1-201ENST00000263121 TMEM57Q8N5G2 664 aa29.17■■■□□ 2.26
SMARCB1-201ENST00000263121 EXOC5O00471 708 aa29.16■■■□□ 2.26
SMARCB1-201ENST00000263121 GIGYF1O75420 1035 aaPredicted RBP29.16■■■□□ 2.26
SMARCB1-201ENST00000263121 SLC39A6Q13433 755 aa29.16■■■□□ 2.26
SMARCB1-201ENST00000263121 CHMP4AQ9BY43 222 aa29.16■■■□□ 2.26
SMARCB1-201ENST00000263121 PAPPAQ13219 1627 aa29.16■■■□□ 2.26
SMARCB1-201ENST00000263121 VPS72Q15906 364 aa29.15■■■□□ 2.26
SMARCB1-201ENST00000263121 DDX19BQ9UMR2 479 aa29.14■■■□□ 2.26
SMARCB1-201ENST00000263121 NECTIN2Q92692 538 aa29.13■■■□□ 2.25
SMARCB1-201ENST00000263121 G2E3Q7L622 706 aa29.12■■■□□ 2.25
SMARCB1-201ENST00000263121 ITPRIPQ8IWB1 547 aa29.12■■■□□ 2.25
SMARCB1-201ENST00000263121 CCDC9Q9Y3X0 531 aaKnown RBP29.12■■■□□ 2.25
SMARCB1-201ENST00000263121 GLI3P10071 1580 aa29.12■■■□□ 2.25
SMARCB1-201ENST00000263121 C5P01031 1676 aa29.12■■■□□ 2.25
SMARCB1-201ENST00000263121 UBR2Q8IWV8 1755 aa29.12■■■□□ 2.25
SMARCB1-201ENST00000263121 TTC5Q8N0Z6 440 aa29.1■■■□□ 2.25
SMARCB1-201ENST00000263121 EIF2S2P20042 333 aaKnown RBP29.09■■■□□ 2.25
SMARCB1-201ENST00000263121 ZNF496Q96IT1 587 aaPredicted RBP29.09■■■□□ 2.25
SMARCB1-201ENST00000263121 USP21Q9UK80 565 aa29.09■■■□□ 2.25
SMARCB1-201ENST00000263121 DDB1Q16531 1140 aa29.09■■■□□ 2.25
SMARCB1-201ENST00000263121 FLIIQ13045 1269 aa29.08■■■□□ 2.25
SMARCB1-201ENST00000263121 ITGB4P16144 1822 aa29.07■■■□□ 2.24
SMARCB1-201ENST00000263121 PRAMEF22A3QJZ6 481 aa29.07■■■□□ 2.24
SMARCB1-201ENST00000263121 MEX3CQ5U5Q3 659 aaKnown RBP29.07■■■□□ 2.24
SMARCB1-201ENST00000263121 FMNL2Q96PY5 1086 aa29.07■■■□□ 2.24
SMARCB1-201ENST00000263121 KCPQ6ZWJ8 1503 aa29.06■■■□□ 2.24
SMARCB1-201ENST00000263121 KDM2BQ8NHM5 1336 aa29.06■■■□□ 2.24
SMARCB1-201ENST00000263121 INTS3Q68E01 1043 aaKnown RBP29.05■■■□□ 2.24
SMARCB1-201ENST00000263121 CHPF2Q9P2E5 772 aa29.05■■■□□ 2.24
SMARCB1-201ENST00000263121 TMOD3Q9NYL9 352 aa29.05■■■□□ 2.24
SMARCB1-201ENST00000263121 LAMB4A4D0S4 1761 aa29.04■■■□□ 2.24
SMARCB1-201ENST00000263121 SNRPA1P09661 255 aaKnown RBP29.03■■■□□ 2.24
SMARCB1-201ENST00000263121 PELP1Q8IZL8 1130 aaKnown RBP29.03■■■□□ 2.24
SMARCB1-201ENST00000263121 ZBTB40Q9NUA8 1239 aa29.03■■■□□ 2.24
SMARCB1-201ENST00000263121 DBF4Q9UBU7 674 aaPredicted RBP29.03■■■□□ 2.24
SMARCB1-201ENST00000263121 DOT1LQ8TEK3 1739 aa29.03■■■□□ 2.24
SMARCB1-201ENST00000263121 ZBTB7BO15156 539 aaPredicted RBP29.02■■■□□ 2.24
SMARCB1-201ENST00000263121 PCDHB15Q9Y5E8 787 aa29.02■■■□□ 2.24
SMARCB1-201ENST00000263121 FAM98CQ17RN3 349 aaKnown RBP29.01■■■□□ 2.23
SMARCB1-201ENST00000263121 CHMP4BQ9H444 224 aaKnown RBP29.01■■■□□ 2.23
SMARCB1-201ENST00000263121 PHAXQ9H814 394 aaKnown RBP29.01■■■□□ 2.23
SMARCB1-201ENST00000263121 BCL9O00512 1426 aa29.01■■■□□ 2.23
SMARCB1-201ENST00000263121 N4BP2Q86UW6 1770 aaPredicted RBP29.01■■■□□ 2.23
SMARCB1-201ENST00000263121 AFF2P51816 1311 aa29.01■■■□□ 2.23
SMARCB1-201ENST00000263121 FKBP5Q13451 457 aaPredicted RBP29■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms