Protein–RNA interactions for Protein: Q9CQI6

Cotl1, Coactosin-like protein, mousemouse

Predictions only

Length 142 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cotl1Q9CQI6 Gm25239-201ENSMUST00000174915 86 ntBASIC25.93■■□□□ 1.74
Cotl1Q9CQI6 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Cotl1Q9CQI6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cotl1Q9CQI6 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cotl1Q9CQI6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cotl1Q9CQI6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
Cotl1Q9CQI6 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC24.04■■□□□ 1.44
Cotl1Q9CQI6 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
Cotl1Q9CQI6 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cotl1Q9CQI6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Cotl1Q9CQI6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Cotl1Q9CQI6 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Cotl1Q9CQI6 Psd-208ENSMUST00000224556 2034 ntBASIC23.33■■□□□ 1.32
Cotl1Q9CQI6 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Cotl1Q9CQI6 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Cotl1Q9CQI6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cotl1Q9CQI6 Gm15042-201ENSMUST00000120212 883 ntBASIC23.21■■□□□ 1.31
Cotl1Q9CQI6 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Cotl1Q9CQI6 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Cotl1Q9CQI6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Cotl1Q9CQI6 Gm15045-201ENSMUST00000117359 883 ntBASIC22.73■■□□□ 1.23
Cotl1Q9CQI6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Cotl1Q9CQI6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.62■■□□□ 1.21
Cotl1Q9CQI6 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cotl1Q9CQI6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cotl1Q9CQI6 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Cotl1Q9CQI6 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cotl1Q9CQI6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Cotl1Q9CQI6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cotl1Q9CQI6 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Cotl1Q9CQI6 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cotl1Q9CQI6 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Cotl1Q9CQI6 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Cotl1Q9CQI6 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.29■■□□□ 1.16
Cotl1Q9CQI6 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Cotl1Q9CQI6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Cotl1Q9CQI6 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Cotl1Q9CQI6 Gm24109-201ENSMUST00000175489 103 ntBASIC22.18■■□□□ 1.14
Cotl1Q9CQI6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Cotl1Q9CQI6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cotl1Q9CQI6 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cotl1Q9CQI6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cotl1Q9CQI6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cotl1Q9CQI6 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.98■■□□□ 1.11
Cotl1Q9CQI6 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cotl1Q9CQI6 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cotl1Q9CQI6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.95■■□□□ 1.1
Cotl1Q9CQI6 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cotl1Q9CQI6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cotl1Q9CQI6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cotl1Q9CQI6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.82■■□□□ 1.08
Cotl1Q9CQI6 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cotl1Q9CQI6 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Cotl1Q9CQI6 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cotl1Q9CQI6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cotl1Q9CQI6 Zxda-201ENSMUST00000117281 2621 ntBASIC21.78■■□□□ 1.08
Cotl1Q9CQI6 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cotl1Q9CQI6 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cotl1Q9CQI6 Gm23366-201ENSMUST00000175022 89 ntBASIC21.77■■□□□ 1.08
Cotl1Q9CQI6 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Cotl1Q9CQI6 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cotl1Q9CQI6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cotl1Q9CQI6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cotl1Q9CQI6 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cotl1Q9CQI6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cotl1Q9CQI6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cotl1Q9CQI6 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cotl1Q9CQI6 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.52■■□□□ 1.04
Cotl1Q9CQI6 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cotl1Q9CQI6 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cotl1Q9CQI6 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cotl1Q9CQI6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.44■■□□□ 1.02
Cotl1Q9CQI6 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.43■■□□□ 1.02
Cotl1Q9CQI6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.42■■□□□ 1.02
Cotl1Q9CQI6 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cotl1Q9CQI6 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.37■■□□□ 1.01
Cotl1Q9CQI6 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.36■■□□□ 1.01
Cotl1Q9CQI6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.31■■□□□ 1
Cotl1Q9CQI6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cotl1Q9CQI6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.31■■□□□ 1
Cotl1Q9CQI6 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Cotl1Q9CQI6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cotl1Q9CQI6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cotl1Q9CQI6 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cotl1Q9CQI6 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cotl1Q9CQI6 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cotl1Q9CQI6 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Cotl1Q9CQI6 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
Cotl1Q9CQI6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cotl1Q9CQI6 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cotl1Q9CQI6 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cotl1Q9CQI6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cotl1Q9CQI6 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cotl1Q9CQI6 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Cotl1Q9CQI6 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cotl1Q9CQI6 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cotl1Q9CQI6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cotl1Q9CQI6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.86■□□□□ 0.93
Cotl1Q9CQI6 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cotl1Q9CQI6 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 72.4 ms