Protein–RNA interactions for Protein: Q99MB1

Tlr3, Toll-like receptor 3, mousemouse

Predictions only

Length 905 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tlr3Q99MB1 Gm25239-201ENSMUST00000174915 86 ntBASIC39.51■■■■□ 3.92
Tlr3Q99MB1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
Tlr3Q99MB1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.66■■■■□ 3.46
Tlr3Q99MB1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Tlr3Q99MB1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
Tlr3Q99MB1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.48■■■■□ 3.27
Tlr3Q99MB1 Gm15042-201ENSMUST00000120212 883 ntBASIC35.02■■■■□ 3.2
Tlr3Q99MB1 Gm24109-201ENSMUST00000175489 103 ntBASIC34.38■■■■□ 3.09
Tlr3Q99MB1 Gm15045-201ENSMUST00000117359 883 ntBASIC34.33■■■■□ 3.09
Tlr3Q99MB1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
Tlr3Q99MB1 Psd-208ENSMUST00000224556 2034 ntBASIC34.04■■■■□ 3.04
Tlr3Q99MB1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■■□ 3
Tlr3Q99MB1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.58■■■□□ 2.97
Tlr3Q99MB1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.96
Tlr3Q99MB1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Tlr3Q99MB1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
Tlr3Q99MB1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.38■■■□□ 2.93
Tlr3Q99MB1 Gm23366-201ENSMUST00000175022 89 ntBASIC33.05■■■□□ 2.88
Tlr3Q99MB1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33■■■□□ 2.87
Tlr3Q99MB1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Tlr3Q99MB1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Tlr3Q99MB1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.9■■■□□ 2.86
Tlr3Q99MB1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.87■■■□□ 2.85
Tlr3Q99MB1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
Tlr3Q99MB1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Tlr3Q99MB1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.78■■■□□ 2.84
Tlr3Q99MB1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.72■■■□□ 2.83
Tlr3Q99MB1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Tlr3Q99MB1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Tlr3Q99MB1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Tlr3Q99MB1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
Tlr3Q99MB1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.35■■■□□ 2.77
Tlr3Q99MB1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
Tlr3Q99MB1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.23■■■□□ 2.75
Tlr3Q99MB1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.16■■■□□ 2.74
Tlr3Q99MB1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Tlr3Q99MB1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Tlr3Q99MB1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Tlr3Q99MB1 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.9■■■□□ 2.7
Tlr3Q99MB1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
Tlr3Q99MB1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.84■■■□□ 2.69
Tlr3Q99MB1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.78■■■□□ 2.68
Tlr3Q99MB1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Tlr3Q99MB1 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Tlr3Q99MB1 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Tlr3Q99MB1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
Tlr3Q99MB1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.42■■■□□ 2.62
Tlr3Q99MB1 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.4■■■□□ 2.62
Tlr3Q99MB1 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Tlr3Q99MB1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Tlr3Q99MB1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Tlr3Q99MB1 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.38■■■□□ 2.61
Tlr3Q99MB1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Tlr3Q99MB1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Tlr3Q99MB1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Tlr3Q99MB1 Gm25238-201ENSMUST00000174914 89 ntBASIC31.24■■■□□ 2.59
Tlr3Q99MB1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Tlr3Q99MB1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Tlr3Q99MB1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Tlr3Q99MB1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Tlr3Q99MB1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Tlr3Q99MB1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
Tlr3Q99MB1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
Tlr3Q99MB1 Gm27325-201ENSMUST00000175467 74 ntBASIC30.8■■■□□ 2.52
Tlr3Q99MB1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Tlr3Q99MB1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.79■■■□□ 2.52
Tlr3Q99MB1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.79■■■□□ 2.52
Tlr3Q99MB1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
Tlr3Q99MB1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.72■■■□□ 2.51
Tlr3Q99MB1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.71■■■□□ 2.51
Tlr3Q99MB1 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
Tlr3Q99MB1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
Tlr3Q99MB1 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.65■■■□□ 2.5
Tlr3Q99MB1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.6■■■□□ 2.49
Tlr3Q99MB1 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Tlr3Q99MB1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Tlr3Q99MB1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Tlr3Q99MB1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Tlr3Q99MB1 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
Tlr3Q99MB1 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC30.31■■■□□ 2.44
Tlr3Q99MB1 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.3■■■□□ 2.44
Tlr3Q99MB1 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.18■■■□□ 2.42
Tlr3Q99MB1 Gm25262-201ENSMUST00000174934 133 ntBASIC30.18■■■□□ 2.42
Tlr3Q99MB1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Tlr3Q99MB1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Tlr3Q99MB1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Tlr3Q99MB1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.12■■■□□ 2.41
Tlr3Q99MB1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Tlr3Q99MB1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Tlr3Q99MB1 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Tlr3Q99MB1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Tlr3Q99MB1 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
Tlr3Q99MB1 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
Tlr3Q99MB1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
Tlr3Q99MB1 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Tlr3Q99MB1 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Tlr3Q99MB1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Tlr3Q99MB1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Tlr3Q99MB1 Rab21-202ENSMUST00000218831 843 ntBASIC29.88■■■□□ 2.37
Tlr3Q99MB1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
Retrieved 100 of 76,532 protein–RNA pairs in 8.1 ms