Protein–RNA interactions for Protein: Q8CDY9

Pcdhb7, Protocadherin beta 7, mousemouse

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb7Q8CDY9 Gm25239-201ENSMUST00000174915 86 ntBASIC36.11■■■■□ 3.37
Pcdhb7Q8CDY9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
Pcdhb7Q8CDY9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
Pcdhb7Q8CDY9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Pcdhb7Q8CDY9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Pcdhb7Q8CDY9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.47■■■□□ 2.79
Pcdhb7Q8CDY9 Gm15042-201ENSMUST00000120212 883 ntBASIC32.04■■■□□ 2.72
Pcdhb7Q8CDY9 Psd-208ENSMUST00000224556 2034 ntBASIC31.54■■■□□ 2.64
Pcdhb7Q8CDY9 Gm15045-201ENSMUST00000117359 883 ntBASIC31.36■■■□□ 2.61
Pcdhb7Q8CDY9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Pcdhb7Q8CDY9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Pcdhb7Q8CDY9 Gm24109-201ENSMUST00000175489 103 ntBASIC31.02■■■□□ 2.56
Pcdhb7Q8CDY9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Pcdhb7Q8CDY9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Pcdhb7Q8CDY9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
Pcdhb7Q8CDY9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.73■■■□□ 2.51
Pcdhb7Q8CDY9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Pcdhb7Q8CDY9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
Pcdhb7Q8CDY9 Gm23366-201ENSMUST00000175022 89 ntBASIC30.26■■■□□ 2.43
Pcdhb7Q8CDY9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Pcdhb7Q8CDY9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
Pcdhb7Q8CDY9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Pcdhb7Q8CDY9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Pcdhb7Q8CDY9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Pcdhb7Q8CDY9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Pcdhb7Q8CDY9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Pcdhb7Q8CDY9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Pcdhb7Q8CDY9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
Pcdhb7Q8CDY9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
Pcdhb7Q8CDY9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.9■■■□□ 2.38
Pcdhb7Q8CDY9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Pcdhb7Q8CDY9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Pcdhb7Q8CDY9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
Pcdhb7Q8CDY9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Pcdhb7Q8CDY9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.6■■■□□ 2.33
Pcdhb7Q8CDY9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
Pcdhb7Q8CDY9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
Pcdhb7Q8CDY9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Pcdhb7Q8CDY9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.47■■■□□ 2.31
Pcdhb7Q8CDY9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Pcdhb7Q8CDY9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC29.22■■■□□ 2.27
Pcdhb7Q8CDY9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Pcdhb7Q8CDY9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.08■■■□□ 2.25
Pcdhb7Q8CDY9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Pcdhb7Q8CDY9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Pcdhb7Q8CDY9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.77■■■□□ 2.2
Pcdhb7Q8CDY9 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.76■■■□□ 2.19
Pcdhb7Q8CDY9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Pcdhb7Q8CDY9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
Pcdhb7Q8CDY9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC28.69■■■□□ 2.18
Pcdhb7Q8CDY9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Pcdhb7Q8CDY9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Pcdhb7Q8CDY9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Pcdhb7Q8CDY9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Pcdhb7Q8CDY9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Pcdhb7Q8CDY9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC28.44■■■□□ 2.14
Pcdhb7Q8CDY9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Pcdhb7Q8CDY9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC28.42■■■□□ 2.14
Pcdhb7Q8CDY9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Pcdhb7Q8CDY9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Pcdhb7Q8CDY9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Pcdhb7Q8CDY9 Gm25238-201ENSMUST00000174914 89 ntBASIC28.33■■■□□ 2.13
Pcdhb7Q8CDY9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.31■■■□□ 2.12
Pcdhb7Q8CDY9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
Pcdhb7Q8CDY9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.21■■■□□ 2.11
Pcdhb7Q8CDY9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Pcdhb7Q8CDY9 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.17■■■□□ 2.1
Pcdhb7Q8CDY9 Gm27325-201ENSMUST00000175467 74 ntBASIC28.16■■■□□ 2.1
Pcdhb7Q8CDY9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Pcdhb7Q8CDY9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.16■■■□□ 2.1
Pcdhb7Q8CDY9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
Pcdhb7Q8CDY9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.12■■■□□ 2.09
Pcdhb7Q8CDY9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
Pcdhb7Q8CDY9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Pcdhb7Q8CDY9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Pcdhb7Q8CDY9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
Pcdhb7Q8CDY9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC28■■■□□ 2.07
Pcdhb7Q8CDY9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Pcdhb7Q8CDY9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Pcdhb7Q8CDY9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.89■■■□□ 2.06
Pcdhb7Q8CDY9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Pcdhb7Q8CDY9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Pcdhb7Q8CDY9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Pcdhb7Q8CDY9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC27.82■■■□□ 2.04
Pcdhb7Q8CDY9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Pcdhb7Q8CDY9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
Pcdhb7Q8CDY9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Pcdhb7Q8CDY9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC27.65■■■□□ 2.02
Pcdhb7Q8CDY9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.62■■■□□ 2.01
Pcdhb7Q8CDY9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Pcdhb7Q8CDY9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.58■■■□□ 2.01
Pcdhb7Q8CDY9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Pcdhb7Q8CDY9 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Pcdhb7Q8CDY9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Pcdhb7Q8CDY9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Pcdhb7Q8CDY9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC27.54■■■□□ 2
Pcdhb7Q8CDY9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Pcdhb7Q8CDY9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Pcdhb7Q8CDY9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Pcdhb7Q8CDY9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC27.44■■□□□ 1.98
Retrieved 100 of 76,532 protein–RNA pairs in 7.7 ms