Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm25239-201ENSMUST00000174915 86 ntBASIC41.58■■■■■ 4.25
Smarca1Q6PGB8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.36■■■■□ 3.73
Smarca1Q6PGB8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
Smarca1Q6PGB8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC37.92■■■■□ 3.66
Smarca1Q6PGB8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
Smarca1Q6PGB8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.79■■■■□ 3.48
Smarca1Q6PGB8 Gm15042-201ENSMUST00000120212 883 ntBASIC36.48■■■■□ 3.43
Smarca1Q6PGB8 Gm24109-201ENSMUST00000175489 103 ntBASIC35.96■■■■□ 3.35
Smarca1Q6PGB8 Gm15045-201ENSMUST00000117359 883 ntBASIC35.68■■■■□ 3.3
Smarca1Q6PGB8 Psd-208ENSMUST00000224556 2034 ntBASIC35.6■■■■□ 3.29
Smarca1Q6PGB8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
Smarca1Q6PGB8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
Smarca1Q6PGB8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.12■■■■□ 3.21
Smarca1Q6PGB8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
Smarca1Q6PGB8 Gm23366-201ENSMUST00000175022 89 ntBASIC34.79■■■■□ 3.16
Smarca1Q6PGB8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.73■■■■□ 3.15
Smarca1Q6PGB8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Smarca1Q6PGB8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
Smarca1Q6PGB8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
Smarca1Q6PGB8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.27■■■■□ 3.08
Smarca1Q6PGB8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
Smarca1Q6PGB8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
Smarca1Q6PGB8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.05
Smarca1Q6PGB8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
Smarca1Q6PGB8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
Smarca1Q6PGB8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.77■■■■□ 3
Smarca1Q6PGB8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.72■■■□□ 2.99
Smarca1Q6PGB8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.7■■■□□ 2.98
Smarca1Q6PGB8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
Smarca1Q6PGB8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
Smarca1Q6PGB8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.48■■■□□ 2.95
Smarca1Q6PGB8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.45■■■□□ 2.95
Smarca1Q6PGB8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Smarca1Q6PGB8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.32■■■□□ 2.92
Smarca1Q6PGB8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.3■■■□□ 2.92
Smarca1Q6PGB8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.29■■■□□ 2.92
Smarca1Q6PGB8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.26■■■□□ 2.91
Smarca1Q6PGB8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.22■■■□□ 2.91
Smarca1Q6PGB8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.11■■■□□ 2.89
Smarca1Q6PGB8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.02■■■□□ 2.88
Smarca1Q6PGB8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Smarca1Q6PGB8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Smarca1Q6PGB8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Smarca1Q6PGB8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
Smarca1Q6PGB8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Smarca1Q6PGB8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Smarca1Q6PGB8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.81■■■□□ 2.84
Smarca1Q6PGB8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
Smarca1Q6PGB8 Gm25238-201ENSMUST00000174914 89 ntBASIC32.77■■■□□ 2.84
Smarca1Q6PGB8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC32.68■■■□□ 2.82
Smarca1Q6PGB8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.61■■■□□ 2.81
Smarca1Q6PGB8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
Smarca1Q6PGB8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
Smarca1Q6PGB8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.4■■■□□ 2.78
Smarca1Q6PGB8 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.35■■■□□ 2.77
Smarca1Q6PGB8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Smarca1Q6PGB8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Smarca1Q6PGB8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.24■■■□□ 2.75
Smarca1Q6PGB8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Smarca1Q6PGB8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
Smarca1Q6PGB8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.11■■■□□ 2.73
Smarca1Q6PGB8 Gm27325-201ENSMUST00000175467 74 ntBASIC32.02■■■□□ 2.72
Smarca1Q6PGB8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Smarca1Q6PGB8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Smarca1Q6PGB8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.9■■■□□ 2.7
Smarca1Q6PGB8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Smarca1Q6PGB8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31.86■■■□□ 2.69
Smarca1Q6PGB8 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Smarca1Q6PGB8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
Smarca1Q6PGB8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Smarca1Q6PGB8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.72■■■□□ 2.67
Smarca1Q6PGB8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Smarca1Q6PGB8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.6■■■□□ 2.65
Smarca1Q6PGB8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.59■■■□□ 2.65
Smarca1Q6PGB8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.56■■■□□ 2.64
Smarca1Q6PGB8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Smarca1Q6PGB8 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Smarca1Q6PGB8 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.48■■■□□ 2.63
Smarca1Q6PGB8 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Smarca1Q6PGB8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Smarca1Q6PGB8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Smarca1Q6PGB8 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
Smarca1Q6PGB8 Gm25262-201ENSMUST00000174934 133 ntBASIC31.38■■■□□ 2.61
Smarca1Q6PGB8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.38■■■□□ 2.61
Smarca1Q6PGB8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
Smarca1Q6PGB8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Smarca1Q6PGB8 Rab21-202ENSMUST00000218831 843 ntBASIC31.36■■■□□ 2.61
Smarca1Q6PGB8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Smarca1Q6PGB8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Smarca1Q6PGB8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
Smarca1Q6PGB8 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Smarca1Q6PGB8 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
Smarca1Q6PGB8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.24■■■□□ 2.59
Smarca1Q6PGB8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
Smarca1Q6PGB8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.13■■■□□ 2.57
Smarca1Q6PGB8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Smarca1Q6PGB8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Smarca1Q6PGB8 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Smarca1Q6PGB8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Smarca1Q6PGB8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms