Protein–RNA interactions for Protein: A0A0G2JG01

Trav13n-4, T cell receptor alpha variable 13N-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13n-4A0A0G2JG01 Gm25239-201ENSMUST00000174915 86 ntBASIC29.81■■■□□ 2.36
Trav13n-4A0A0G2JG01 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
Trav13n-4A0A0G2JG01 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Trav13n-4A0A0G2JG01 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Trav13n-4A0A0G2JG01 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Trav13n-4A0A0G2JG01 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
Trav13n-4A0A0G2JG01 Gm24109-201ENSMUST00000175489 103 ntBASIC25.95■■□□□ 1.74
Trav13n-4A0A0G2JG01 Gm15042-201ENSMUST00000120212 883 ntBASIC25.92■■□□□ 1.74
Trav13n-4A0A0G2JG01 Psd-208ENSMUST00000224556 2034 ntBASIC25.32■■□□□ 1.64
Trav13n-4A0A0G2JG01 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Trav13n-4A0A0G2JG01 Gm15045-201ENSMUST00000117359 883 ntBASIC25.23■■□□□ 1.63
Trav13n-4A0A0G2JG01 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Trav13n-4A0A0G2JG01 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Trav13n-4A0A0G2JG01 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Trav13n-4A0A0G2JG01 Gm23366-201ENSMUST00000175022 89 ntBASIC24.92■■□□□ 1.58
Trav13n-4A0A0G2JG01 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Trav13n-4A0A0G2JG01 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Trav13n-4A0A0G2JG01 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trav13n-4A0A0G2JG01 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Trav13n-4A0A0G2JG01 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Trav13n-4A0A0G2JG01 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24.25■■□□□ 1.47
Trav13n-4A0A0G2JG01 AC153911.1-202ENSMUST00000218534 1034 ntBASIC24.24■■□□□ 1.47
Trav13n-4A0A0G2JG01 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trav13n-4A0A0G2JG01 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trav13n-4A0A0G2JG01 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trav13n-4A0A0G2JG01 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trav13n-4A0A0G2JG01 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC24.05■■□□□ 1.44
Trav13n-4A0A0G2JG01 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC24.02■■□□□ 1.44
Trav13n-4A0A0G2JG01 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
Trav13n-4A0A0G2JG01 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trav13n-4A0A0G2JG01 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trav13n-4A0A0G2JG01 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trav13n-4A0A0G2JG01 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trav13n-4A0A0G2JG01 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trav13n-4A0A0G2JG01 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trav13n-4A0A0G2JG01 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trav13n-4A0A0G2JG01 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC23.65■■□□□ 1.38
Trav13n-4A0A0G2JG01 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trav13n-4A0A0G2JG01 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trav13n-4A0A0G2JG01 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trav13n-4A0A0G2JG01 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trav13n-4A0A0G2JG01 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trav13n-4A0A0G2JG01 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Trav13n-4A0A0G2JG01 Gm25238-201ENSMUST00000174914 89 ntBASIC23.54■■□□□ 1.36
Trav13n-4A0A0G2JG01 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23.47■■□□□ 1.35
Trav13n-4A0A0G2JG01 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Trav13n-4A0A0G2JG01 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav13n-4A0A0G2JG01 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
Trav13n-4A0A0G2JG01 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC23.35■■□□□ 1.33
Trav13n-4A0A0G2JG01 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Trav13n-4A0A0G2JG01 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trav13n-4A0A0G2JG01 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trav13n-4A0A0G2JG01 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.15■■□□□ 1.3
Trav13n-4A0A0G2JG01 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
Trav13n-4A0A0G2JG01 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Trav13n-4A0A0G2JG01 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trav13n-4A0A0G2JG01 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.96■■□□□ 1.27
Trav13n-4A0A0G2JG01 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trav13n-4A0A0G2JG01 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC22.91■■□□□ 1.26
Trav13n-4A0A0G2JG01 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav13n-4A0A0G2JG01 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.89■■□□□ 1.26
Trav13n-4A0A0G2JG01 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trav13n-4A0A0G2JG01 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.85■■□□□ 1.25
Trav13n-4A0A0G2JG01 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
Trav13n-4A0A0G2JG01 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Trav13n-4A0A0G2JG01 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC22.81■■□□□ 1.24
Trav13n-4A0A0G2JG01 Gm25262-201ENSMUST00000174934 133 ntBASIC22.73■■□□□ 1.23
Trav13n-4A0A0G2JG01 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC22.68■■□□□ 1.22
Trav13n-4A0A0G2JG01 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Trav13n-4A0A0G2JG01 Gm27325-201ENSMUST00000175467 74 ntBASIC22.62■■□□□ 1.21
Trav13n-4A0A0G2JG01 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav13n-4A0A0G2JG01 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trav13n-4A0A0G2JG01 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trav13n-4A0A0G2JG01 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Trav13n-4A0A0G2JG01 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.45■■□□□ 1.18
Trav13n-4A0A0G2JG01 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trav13n-4A0A0G2JG01 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trav13n-4A0A0G2JG01 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav13n-4A0A0G2JG01 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav13n-4A0A0G2JG01 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trav13n-4A0A0G2JG01 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.4■■□□□ 1.18
Trav13n-4A0A0G2JG01 Rab21-202ENSMUST00000218831 843 ntBASIC22.37■■□□□ 1.17
Trav13n-4A0A0G2JG01 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav13n-4A0A0G2JG01 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC22.35■■□□□ 1.17
Trav13n-4A0A0G2JG01 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC22.35■■□□□ 1.17
Trav13n-4A0A0G2JG01 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC22.34■■□□□ 1.17
Trav13n-4A0A0G2JG01 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Trav13n-4A0A0G2JG01 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
Trav13n-4A0A0G2JG01 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
Trav13n-4A0A0G2JG01 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trav13n-4A0A0G2JG01 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trav13n-4A0A0G2JG01 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Trav13n-4A0A0G2JG01 Gm26115-201ENSMUST00000175605 87 ntBASIC22.24■■□□□ 1.15
Trav13n-4A0A0G2JG01 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.21■■□□□ 1.15
Trav13n-4A0A0G2JG01 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Trav13n-4A0A0G2JG01 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trav13n-4A0A0G2JG01 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC22.14■■□□□ 1.13
Trav13n-4A0A0G2JG01 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trav13n-4A0A0G2JG01 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trav13n-4A0A0G2JG01 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms