Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RNU6-829P-201ENST00000363700 112 ntBASIC-1.16□□□□□ -2.6
FOXF1Q12946 RNU6-119P-201ENST00000364882 107 ntBASIC-1.16□□□□□ -2.6
FOXF1Q12946 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.16□□□□□ -2.6
FOXF1Q12946 RNU6-820P-201ENST00000384273 107 ntBASIC-1.16□□□□□ -2.6
FOXF1Q12946 RNU6-279P-201ENST00000391297 101 ntBASIC-1.16□□□□□ -2.6
FOXF1Q12946 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.16□□□□□ -2.6
FOXF1Q12946 MIR3668-201ENST00000582138 75 ntBASIC-1.16□□□□□ -2.6
FOXF1Q12946 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.17□□□□□ -2.6
FOXF1Q12946 SNORD115.2-201ENST00000391126 59 ntBASIC-1.17□□□□□ -2.6
FOXF1Q12946 RNY4P25-201ENST00000459254 96 ntBASIC-1.17□□□□□ -2.6
FOXF1Q12946 AC103706.3-201ENST00000636297 85 ntBASIC-1.17□□□□□ -2.6
FOXF1Q12946 SNORD45C-201ENST00000383893 79 ntBASIC-1.18□□□□□ -2.6
FOXF1Q12946 SNORD54-201ENST00000459159 67 ntBASIC-1.18□□□□□ -2.6
FOXF1Q12946 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.18□□□□□ -2.6
FOXF1Q12946 RNU6-539P-201ENST00000516665 103 ntBASIC-1.18□□□□□ -2.6
FOXF1Q12946 SNORD45.2-201ENST00000363552 72 ntBASIC-1.19□□□□□ -2.6
FOXF1Q12946 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.19□□□□□ -2.6
FOXF1Q12946 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.19□□□□□ -2.6
FOXF1Q12946 MIR4723-201ENST00000585070 81 ntBASIC-1.19□□□□□ -2.6
FOXF1Q12946 RNU4-33P-201ENST00000364316 85 ntBASIC-1.2□□□□□ -2.6
FOXF1Q12946 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.2□□□□□ -2.6
FOXF1Q12946 SNORD78.1-201ENST00000390866 65 ntBASIC-1.2□□□□□ -2.6
FOXF1Q12946 RNU6-176P-201ENST00000517196 105 ntBASIC-1.2□□□□□ -2.6
FOXF1Q12946 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.21□□□□□ -2.6
FOXF1Q12946 RNU6-776P-201ENST00000364403 104 ntBASIC-1.21□□□□□ -2.6
FOXF1Q12946 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.21□□□□□ -2.6
FOXF1Q12946 MIR656-201ENST00000385224 78 ntBASIC-1.21□□□□□ -2.6
FOXF1Q12946 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.21□□□□□ -2.6
FOXF1Q12946 MIR548AL-201ENST00000578416 97 ntBASIC-1.21□□□□□ -2.6
FOXF1Q12946 AL359920.1-201ENST00000618332 176 ntBASIC-1.21□□□□□ -2.6
FOXF1Q12946 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.22□□□□□ -2.6
FOXF1Q12946 RNU6-836P-201ENST00000362920 107 ntBASIC-1.23□□□□□ -2.61
FOXF1Q12946 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.23□□□□□ -2.61
FOXF1Q12946 SNORA26.2-201ENST00000390922 122 ntBASIC-1.23□□□□□ -2.61
FOXF1Q12946 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.23□□□□□ -2.61
FOXF1Q12946 MIR3202-2-201ENST00000635980 79 ntBASIC-1.23□□□□□ -2.61
FOXF1Q12946 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.23□□□□□ -2.61
FOXF1Q12946 SNORD114-13-201ENST00000364377 74 ntBASIC-1.24□□□□□ -2.61
FOXF1Q12946 RNU6-471P-201ENST00000383944 106 ntBASIC-1.24□□□□□ -2.61
FOXF1Q12946 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.24□□□□□ -2.61
FOXF1Q12946 MIR1207-201ENST00000408249 87 ntBASIC-1.24□□□□□ -2.61
FOXF1Q12946 RNU6-871P-201ENST00000516122 100 ntBASIC-1.24□□□□□ -2.61
FOXF1Q12946 MIR4679-1-201ENST00000637619 75 ntBASIC-1.24□□□□□ -2.61
FOXF1Q12946 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.25□□□□□ -2.61
FOXF1Q12946 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.25□□□□□ -2.61
FOXF1Q12946 RNA5SP170-201ENST00000517150 101 ntBASIC-1.25□□□□□ -2.61
FOXF1Q12946 MIR4317-201ENST00000637586 65 ntBASIC-1.25□□□□□ -2.61
FOXF1Q12946 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.26□□□□□ -2.61
FOXF1Q12946 RNU6-59P-201ENST00000384787 107 ntBASIC-1.27□□□□□ -2.61
FOXF1Q12946 AC114801.3-201ENST00000510231 177 ntBASIC-1.27□□□□□ -2.61
FOXF1Q12946 RNU6-803P-201ENST00000516034 102 ntBASIC-1.27□□□□□ -2.61
FOXF1Q12946 RNU6-822P-201ENST00000362707 106 ntBASIC-1.28□□□□□ -2.61
FOXF1Q12946 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.28□□□□□ -2.61
FOXF1Q12946 RNU6-808P-201ENST00000391233 108 ntBASIC-1.28□□□□□ -2.61
FOXF1Q12946 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.28□□□□□ -2.61
FOXF1Q12946 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.29□□□□□ -2.62
FOXF1Q12946 AL603908.1-201ENST00000406098 201 ntBASIC-1.29□□□□□ -2.62
FOXF1Q12946 AC079150.2-201ENST00000443733 78 ntBASIC-1.29□□□□□ -2.62
FOXF1Q12946 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.3□□□□□ -2.62
FOXF1Q12946 RNU6-838P-201ENST00000363399 108 ntBASIC-1.31□□□□□ -2.62
FOXF1Q12946 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.31□□□□□ -2.62
FOXF1Q12946 RNA5SP106-201ENST00000517274 100 ntBASIC-1.31□□□□□ -2.62
FOXF1Q12946 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.31□□□□□ -2.62
FOXF1Q12946 RNU6-753P-201ENST00000363926 107 ntBASIC-1.32□□□□□ -2.62
FOXF1Q12946 RNY4P10-201ENST00000365571 96 ntBASIC-1.32□□□□□ -2.62
FOXF1Q12946 MIR509-1-201ENST00000385265 94 ntBASIC-1.32□□□□□ -2.62
FOXF1Q12946 MIR509-2-201ENST00000390724 91 ntBASIC-1.32□□□□□ -2.62
FOXF1Q12946 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.32□□□□□ -2.62
FOXF1Q12946 MIR548F3-201ENST00000408509 87 ntBASIC-1.32□□□□□ -2.62
FOXF1Q12946 RNA5SP449-201ENST00000516871 130 ntBASIC-1.33□□□□□ -2.62
FOXF1Q12946 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.34□□□□□ -2.62
FOXF1Q12946 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.34□□□□□ -2.62
FOXF1Q12946 MIR4662A-201ENST00000637499 67 ntBASIC-1.34□□□□□ -2.62
FOXF1Q12946 RNU6-936P-201ENST00000384005 107 ntBASIC-1.35□□□□□ -2.63
FOXF1Q12946 RNU6-1024P-201ENST00000384199 107 ntBASIC-1.37□□□□□ -2.63
FOXF1Q12946 RNU6-665P-201ENST00000384639 107 ntBASIC-1.37□□□□□ -2.63
FOXF1Q12946 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.38□□□□□ -2.63
FOXF1Q12946 RNU6-422P-201ENST00000384632 107 ntBASIC-1.38□□□□□ -2.63
FOXF1Q12946 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.38□□□□□ -2.63
FOXF1Q12946 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.39□□□□□ -2.63
FOXF1Q12946 RNY4-201ENST00000516507 96 ntBASIC-1.39□□□□□ -2.63
FOXF1Q12946 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.4□□□□□ -2.63
FOXF1Q12946 RNU6-930P-201ENST00000390938 100 ntBASIC-1.4□□□□□ -2.63
FOXF1Q12946 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.4□□□□□ -2.63
FOXF1Q12946 SNORD111B-201ENST00000408587 80 ntBASIC-1.41□□□□□ -2.64
FOXF1Q12946 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.41□□□□□ -2.64
FOXF1Q12946 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.42□□□□□ -2.64
FOXF1Q12946 RNU6-499P-201ENST00000365615 107 ntBASIC-1.42□□□□□ -2.64
FOXF1Q12946 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.42□□□□□ -2.64
FOXF1Q12946 RNY4P7-201ENST00000364600 96 ntBASIC-1.43□□□□□ -2.64
FOXF1Q12946 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.43□□□□□ -2.64
FOXF1Q12946 Y_RNA.657-201ENST00000515983 102 ntBASIC-1.43□□□□□ -2.64
FOXF1Q12946 MIR1302-4-201ENST00000408701 150 ntBASIC-1.45□□□□□ -2.64
FOXF1Q12946 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-1.45□□□□□ -2.64
FOXF1Q12946 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.46□□□□□ -2.64
FOXF1Q12946 AC125388.1-201ENST00000459631 156 ntBASIC-1.46□□□□□ -2.64
FOXF1Q12946 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.47□□□□□ -2.64
FOXF1Q12946 RNU6-987P-201ENST00000384759 104 ntBASIC-1.49□□□□□ -2.65
FOXF1Q12946 RNU6-485P-201ENST00000363475 107 ntBASIC-1.53□□□□□ -2.65
FOXF1Q12946 RNU6-638P-201ENST00000516582 104 ntBASIC-1.54□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 249.7 ms