Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC006160.2-201ENST00000637708 154 ntBASIC-2.85□□□□□ -2.87
USF3Q68DE3 Y_RNA.20-201ENST00000362479 113 ntBASIC-2.85□□□□□ -2.87
USF3Q68DE3 Y_RNA.350-201ENST00000365409 98 ntBASIC-2.85□□□□□ -2.87
USF3Q68DE3 SNORD116-18-201ENST00000383961 92 ntBASIC-2.85□□□□□ -2.87
USF3Q68DE3 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-2.85□□□□□ -2.87
USF3Q68DE3 AL451105.1-201ENST00000450005 189 ntBASIC-2.86□□□□□ -2.87
USF3Q68DE3 MIR664A-201ENST00000626086 82 ntBASIC-2.86□□□□□ -2.87
USF3Q68DE3 MIR2052-201ENST00000636055 55 ntBASIC-2.86□□□□□ -2.87
USF3Q68DE3 RNU6-1134P-201ENST00000365156 101 ntBASIC-2.87□□□□□ -2.87
USF3Q68DE3 MIR548H4-201ENST00000408689 111 ntBASIC-2.87□□□□□ -2.87
USF3Q68DE3 AC139453.2-201ENST00000487255 133 ntBASIC-2.87□□□□□ -2.87
USF3Q68DE3 AC093729.1-201ENST00000513074 128 ntBASIC-2.87□□□□□ -2.87
USF3Q68DE3 RNU6-623P-201ENST00000363143 105 ntBASIC-2.88□□□□□ -2.87
USF3Q68DE3 RNU6-422P-201ENST00000384632 107 ntBASIC-2.88□□□□□ -2.87
USF3Q68DE3 AL157777.2-201ENST00000258070 137 ntBASIC-2.88□□□□□ -2.87
USF3Q68DE3 SNORA19-201ENST00000384737 128 ntBASIC-2.88□□□□□ -2.87
USF3Q68DE3 Y_RNA.93-201ENST00000363066 109 ntBASIC-2.89□□□□□ -2.87
USF3Q68DE3 RNU6-875P-201ENST00000516488 106 ntBASIC-2.89□□□□□ -2.87
USF3Q68DE3 MIR548AI-201ENST00000579940 88 ntBASIC-2.89□□□□□ -2.87
USF3Q68DE3 MIR3171-201ENST00000584270 74 ntBASIC-2.89□□□□□ -2.87
USF3Q68DE3 RNU7-119P-201ENST00000459279 63 ntBASIC-2.89□□□□□ -2.87
USF3Q68DE3 RNU6-231P-201ENST00000517122 103 ntBASIC-2.89□□□□□ -2.87
USF3Q68DE3 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.9□□□□□ -2.87
USF3Q68DE3 SNORD116-22-201ENST00000384430 92 ntBASIC-2.91□□□□□ -2.87
USF3Q68DE3 MIR590-201ENST00000385008 97 ntBASIC-2.91□□□□□ -2.87
USF3Q68DE3 RNU6-426P-201ENST00000516464 97 ntBASIC-2.91□□□□□ -2.87
USF3Q68DE3 Y_RNA.290-201ENST00000364879 114 ntBASIC-2.91□□□□□ -2.88
USF3Q68DE3 MIR545-201ENST00000385085 106 ntBASIC-2.91□□□□□ -2.88
USF3Q68DE3 SNORD115.2-201ENST00000391126 59 ntBASIC-2.91□□□□□ -2.88
USF3Q68DE3 RNU7-107P-201ENST00000459121 61 ntBASIC-2.91□□□□□ -2.88
USF3Q68DE3 MIR4795-201ENST00000584182 89 ntBASIC-2.91□□□□□ -2.88
USF3Q68DE3 RNA5SP449-201ENST00000516871 130 ntBASIC-2.92□□□□□ -2.88
USF3Q68DE3 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.93□□□□□ -2.88
USF3Q68DE3 Y_RNA.580-201ENST00000391004 95 ntBASIC-2.93□□□□□ -2.88
USF3Q68DE3 Y_RNA.620-201ENST00000411009 88 ntBASIC-2.93□□□□□ -2.88
USF3Q68DE3 Y_RNA.138-201ENST00000363462 102 ntBASIC-2.94□□□□□ -2.88
USF3Q68DE3 MTND4LP9-201ENST00000427694 174 ntBASIC-2.94□□□□□ -2.88
USF3Q68DE3 RNU6-940P-201ENST00000363433 104 ntBASIC-2.95□□□□□ -2.88
USF3Q68DE3 SNORA25.5-201ENST00000363782 126 ntBASIC-2.95□□□□□ -2.88
USF3Q68DE3 Y_RNA.218-201ENST00000364218 104 ntBASIC-2.95□□□□□ -2.88
USF3Q68DE3 MT-TD-201ENST00000387419 68 ntBASIC-2.95□□□□□ -2.88
USF3Q68DE3 RNU6-1023P-201ENST00000516137 106 ntBASIC-2.95□□□□□ -2.88
USF3Q68DE3 U6.95-201ENST00000636931 70 ntBASIC-2.95□□□□□ -2.88
USF3Q68DE3 RNU6-70P-201ENST00000516438 60 ntBASIC-2.95□□□□□ -2.88
USF3Q68DE3 Y_RNA.216-201ENST00000364205 93 ntBASIC-2.96□□□□□ -2.88
USF3Q68DE3 Y_RNA.574-201ENST00000384766 95 ntBASIC-2.96□□□□□ -2.88
USF3Q68DE3 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.96□□□□□ -2.88
USF3Q68DE3 SNORA63.4-201ENST00000362763 126 ntBASIC-2.97□□□□□ -2.88
USF3Q68DE3 Y_RNA.335-201ENST00000365299 96 ntBASIC-2.97□□□□□ -2.88
USF3Q68DE3 RNU6-497P-201ENST00000365316 104 ntBASIC-2.97□□□□□ -2.88
USF3Q68DE3 RNU6-797P-201ENST00000363101 109 ntBASIC-2.97□□□□□ -2.89
USF3Q68DE3 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.97□□□□□ -2.89
USF3Q68DE3 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.97□□□□□ -2.89
USF3Q68DE3 MIR3128-201ENST00000581957 66 ntBASIC-2.98□□□□□ -2.89
USF3Q68DE3 Y_RNA.712-201ENST00000517011 92 ntBASIC-2.99□□□□□ -2.89
USF3Q68DE3 RNU6-111P-201ENST00000517179 105 ntBASIC-2.99□□□□□ -2.89
USF3Q68DE3 MIR4484-201ENST00000582855 83 ntBASIC-2.99□□□□□ -2.89
USF3Q68DE3 RNU6-776P-201ENST00000364403 104 ntBASIC-2.99□□□□□ -2.89
USF3Q68DE3 RNU6-1022P-201ENST00000365049 104 ntBASIC-2.99□□□□□ -2.89
USF3Q68DE3 Y_RNA.343-201ENST00000365354 112 ntBASIC-2.99□□□□□ -2.89
USF3Q68DE3 Y_RNA.356-201ENST00000365475 113 ntBASIC-2.99□□□□□ -2.89
USF3Q68DE3 AL353621.2-201ENST00000605340 133 ntBASIC-2.99□□□□□ -2.89
USF3Q68DE3 SNORA40-201ENST00000388090 126 ntBASIC-3□□□□□ -2.89
USF3Q68DE3 MIR3914-2-201ENST00000637339 95 ntBASIC-3□□□□□ -2.89
USF3Q68DE3 Y_RNA.219-201ENST00000364232 113 ntBASIC-3.01□□□□□ -2.89
USF3Q68DE3 Y_RNA.611-201ENST00000410682 108 ntBASIC-3.01□□□□□ -2.89
USF3Q68DE3 Y_RNA.619-201ENST00000410951 90 ntBASIC-3.01□□□□□ -2.89
USF3Q68DE3 SNORD116-24-201ENST00000384549 92 ntBASIC-3.01□□□□□ -2.89
USF3Q68DE3 RNU6-380P-201ENST00000410207 107 ntBASIC-3.01□□□□□ -2.89
USF3Q68DE3 MTND4P29-201ENST00000503122 1372 ntBASIC-3.02□□□□□ -2.89
USF3Q68DE3 RNU6-315P-201ENST00000362666 107 ntBASIC-3.02□□□□□ -2.89
USF3Q68DE3 RNU6-895P-201ENST00000384125 103 ntBASIC-3.02□□□□□ -2.89
USF3Q68DE3 MIR569-201ENST00000385228 96 ntBASIC-3.02□□□□□ -2.89
USF3Q68DE3 RNU6-836P-201ENST00000362920 107 ntBASIC-3.03□□□□□ -2.89
USF3Q68DE3 Y_RNA.297-201ENST00000364950 91 ntBASIC-3.03□□□□□ -2.89
USF3Q68DE3 MIR548X-201ENST00000580069 75 ntBASIC-3.03□□□□□ -2.89
USF3Q68DE3 MTND5P20-201ENST00000448677 143 ntBASIC-3.03□□□□□ -2.89
USF3Q68DE3 SCARNA15.1-201ENST00000516384 125 ntBASIC-3.03□□□□□ -2.89
USF3Q68DE3 Y_RNA.544-201ENST00000384650 113 ntBASIC-3.04□□□□□ -2.9
USF3Q68DE3 SNORA20.1-201ENST00000364790 130 ntBASIC-3.05□□□□□ -2.9
USF3Q68DE3 SNORD116-21-201ENST00000384507 92 ntBASIC-3.05□□□□□ -2.9
USF3Q68DE3 RNU6-659P-201ENST00000516454 104 ntBASIC-3.05□□□□□ -2.9
USF3Q68DE3 RNU6-419P-201ENST00000517030 63 ntBASIC-3.05□□□□□ -2.9
USF3Q68DE3 RNU6-394P-201ENST00000410735 107 ntBASIC-3.06□□□□□ -2.9
USF3Q68DE3 MIR4801-201ENST00000582704 82 ntBASIC-3.06□□□□□ -2.9
USF3Q68DE3 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.07□□□□□ -2.9
USF3Q68DE3 MIR3938-201ENST00000582157 103 ntBASIC-3.07□□□□□ -2.9
USF3Q68DE3 AC004792.1-201ENST00000614523 137 ntBASIC-3.07□□□□□ -2.9
USF3Q68DE3 MIR548BB-201ENST00000626714 66 ntBASIC-3.07□□□□□ -2.9
USF3Q68DE3 Y_RNA.565-201ENST00000384719 101 ntBASIC-3.08□□□□□ -2.9
USF3Q68DE3 RNU6-808P-201ENST00000391233 108 ntBASIC-3.08□□□□□ -2.9
USF3Q68DE3 RNU7-120P-201ENST00000459334 63 ntBASIC-3.08□□□□□ -2.9
USF3Q68DE3 U6atac.1-201ENST00000616025 117 ntBASIC-3.08□□□□□ -2.9
USF3Q68DE3 Y_RNA.273-201ENST00000364703 102 ntBASIC-3.08□□□□□ -2.9
USF3Q68DE3 Y_RNA.406-201ENST00000383984 100 ntBASIC-3.08□□□□□ -2.9
USF3Q68DE3 MIR548F4-201ENST00000408515 105 ntBASIC-3.08□□□□□ -2.9
USF3Q68DE3 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-3.08□□□□□ -2.9
USF3Q68DE3 RNU6-1255P-201ENST00000363434 112 ntBASIC-3.09□□□□□ -2.9
USF3Q68DE3 AC062037.2-201ENST00000610137 73 ntBASIC-3.09□□□□□ -2.9
USF3Q68DE3 MIR548AL-201ENST00000578416 97 ntBASIC-3.09□□□□□ -2.9
Retrieved 100 of 98,524 protein–RNA pairs in 246.8 ms