Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-2.73□□□□□ -2.85
CCDC88AQ3V6T2 RNU7-160P-201ENST00000516660 62 ntBASIC-2.73□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-380P-201ENST00000410207 107 ntBASIC-2.74□□□□□ -2.85
CCDC88AQ3V6T2 Y_RNA.611-201ENST00000410682 108 ntBASIC-2.74□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-675P-201ENST00000384236 104 ntBASIC-2.75□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-907P-201ENST00000390924 102 ntBASIC-2.75□□□□□ -2.85
CCDC88AQ3V6T2 AC097484.2-201ENST00000509147 251 ntBASIC-2.75□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-974P-201ENST00000384099 108 ntBASIC-2.75□□□□□ -2.85
CCDC88AQ3V6T2 SNORD45A-201ENST00000384512 84 ntBASIC-2.76□□□□□ -2.85
CCDC88AQ3V6T2 MIR581-201ENST00000384895 96 ntBASIC-2.76□□□□□ -2.85
CCDC88AQ3V6T2 SNORD116-14-201ENST00000383894 92 ntBASIC-2.77□□□□□ -2.85
CCDC88AQ3V6T2 SNORD116-17-201ENST00000383929 92 ntBASIC-2.77□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-463P-201ENST00000384340 107 ntBASIC-2.77□□□□□ -2.85
CCDC88AQ3V6T2 SNORD116-15-201ENST00000384445 92 ntBASIC-2.77□□□□□ -2.85
CCDC88AQ3V6T2 SNORD116-19-201ENST00000384729 92 ntBASIC-2.77□□□□□ -2.85
CCDC88AQ3V6T2 SNORD115-31-201ENST00000365318 82 ntBASIC-2.77□□□□□ -2.85
CCDC88AQ3V6T2 SCARNA15.1-201ENST00000516384 125 ntBASIC-2.77□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-267P-201ENST00000516714 103 ntBASIC-2.77□□□□□ -2.85
CCDC88AQ3V6T2 SNORD45.2-201ENST00000363552 72 ntBASIC-2.78□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-219P-201ENST00000364728 107 ntBASIC-2.78□□□□□ -2.85
CCDC88AQ3V6T2 Y_RNA.464-201ENST00000384282 110 ntBASIC-2.78□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-589P-201ENST00000516485 107 ntBASIC-2.79□□□□□ -2.86
CCDC88AQ3V6T2 MIR579-201ENST00000385221 98 ntBASIC-2.81□□□□□ -2.86
CCDC88AQ3V6T2 RNU6-70P-201ENST00000516438 60 ntBASIC-2.81□□□□□ -2.86
CCDC88AQ3V6T2 RNU6-172P-201ENST00000411000 93 ntBASIC-2.82□□□□□ -2.86
CCDC88AQ3V6T2 RNU6-109P-201ENST00000516364 107 ntBASIC-2.82□□□□□ -2.86
CCDC88AQ3V6T2 RNU6-184P-201ENST00000516514 107 ntBASIC-2.82□□□□□ -2.86
CCDC88AQ3V6T2 RNY4P10-201ENST00000365571 96 ntBASIC-2.82□□□□□ -2.86
CCDC88AQ3V6T2 MIR664A-201ENST00000626086 82 ntBASIC-2.82□□□□□ -2.86
CCDC88AQ3V6T2 MIR548BB-201ENST00000626714 66 ntBASIC-2.82□□□□□ -2.86
CCDC88AQ3V6T2 SNORA17.4-201ENST00000391287 132 ntBASIC-2.83□□□□□ -2.86
CCDC88AQ3V6T2 RNU6-176P-201ENST00000517196 105 ntBASIC-2.83□□□□□ -2.86
CCDC88AQ3V6T2 RNU6-92P-201ENST00000605893 104 ntBASIC-2.83□□□□□ -2.86
CCDC88AQ3V6T2 RNU6-315P-201ENST00000362666 107 ntBASIC-2.84□□□□□ -2.86
CCDC88AQ3V6T2 RNU6-520P-201ENST00000384717 104 ntBASIC-2.84□□□□□ -2.86
CCDC88AQ3V6T2 Y_RNA.629-201ENST00000411368 105 ntBASIC-2.84□□□□□ -2.86
CCDC88AQ3V6T2 RNA5SP106-201ENST00000517274 100 ntBASIC-2.84□□□□□ -2.86
CCDC88AQ3V6T2 Y_RNA.219-201ENST00000364232 113 ntBASIC-2.85□□□□□ -2.87
CCDC88AQ3V6T2 AC008267.6-201ENST00000441664 139 ntBASIC-2.85□□□□□ -2.87
CCDC88AQ3V6T2 SNORA25.5-201ENST00000363782 126 ntBASIC-2.86□□□□□ -2.87
CCDC88AQ3V6T2 Y_RNA.709-201ENST00000516952 92 ntBASIC-2.86□□□□□ -2.87
CCDC88AQ3V6T2 SNORD60.1-201ENST00000362451 73 ntBASIC-2.87□□□□□ -2.87
CCDC88AQ3V6T2 RNU6-979P-201ENST00000383896 107 ntBASIC-2.87□□□□□ -2.87
CCDC88AQ3V6T2 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.87□□□□□ -2.87
CCDC88AQ3V6T2 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-2.87□□□□□ -2.87
CCDC88AQ3V6T2 RNU6-912P-201ENST00000363800 104 ntBASIC-2.88□□□□□ -2.87
CCDC88AQ3V6T2 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.88□□□□□ -2.87
CCDC88AQ3V6T2 RNU6-834P-201ENST00000362367 110 ntBASIC-2.88□□□□□ -2.87
CCDC88AQ3V6T2 RNU6-694P-201ENST00000364071 147 ntBASIC-2.88□□□□□ -2.87
CCDC88AQ3V6T2 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.88□□□□□ -2.87
CCDC88AQ3V6T2 MIR202-201ENST00000362219 110 ntBASIC-2.9□□□□□ -2.87
CCDC88AQ3V6T2 SNORA63.4-201ENST00000362763 126 ntBASIC-2.9□□□□□ -2.87
CCDC88AQ3V6T2 RNU6-940P-201ENST00000363433 104 ntBASIC-2.9□□□□□ -2.87
CCDC88AQ3V6T2 RNU6-1168P-201ENST00000390831 104 ntBASIC-2.9□□□□□ -2.87
CCDC88AQ3V6T2 MIR548AI-201ENST00000579940 88 ntBASIC-2.9□□□□□ -2.87
CCDC88AQ3V6T2 SNORD113-3-201ENST00000364830 72 ntBASIC-2.91□□□□□ -2.88
CCDC88AQ3V6T2 RNU6-828P-201ENST00000364876 107 ntBASIC-2.91□□□□□ -2.88
CCDC88AQ3V6T2 SNORA40B-201ENST00000385573 128 ntBASIC-2.91□□□□□ -2.88
CCDC88AQ3V6T2 MALAT1.1-201ENST00000618249 95 ntBASIC-2.91□□□□□ -2.88
CCDC88AQ3V6T2 RNU6-346P-201ENST00000516288 111 ntBASIC-2.92□□□□□ -2.88
CCDC88AQ3V6T2 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.92□□□□□ -2.88
CCDC88AQ3V6T2 MIR5693-201ENST00000577722 73 ntBASIC-2.92□□□□□ -2.88
CCDC88AQ3V6T2 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.92□□□□□ -2.88
CCDC88AQ3V6T2 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.92□□□□□ -2.88
CCDC88AQ3V6T2 AL031737.1-201ENST00000450125 223 ntBASIC-2.93□□□□□ -2.88
CCDC88AQ3V6T2 RNU6-68P-201ENST00000516576 104 ntBASIC-2.93□□□□□ -2.88
CCDC88AQ3V6T2 SNORD116-24-201ENST00000384549 92 ntBASIC-2.94□□□□□ -2.88
CCDC88AQ3V6T2 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.94□□□□□ -2.88
CCDC88AQ3V6T2 MIR7110-201ENST00000612638 86 ntBASIC-2.94□□□□□ -2.88
CCDC88AQ3V6T2 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.95□□□□□ -2.88
CCDC88AQ3V6T2 RNU6-1056P-201ENST00000383996 107 ntBASIC-2.95□□□□□ -2.88
CCDC88AQ3V6T2 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.95□□□□□ -2.88
CCDC88AQ3V6T2 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.96□□□□□ -2.88
CCDC88AQ3V6T2 RNU6-810P-201ENST00000364001 107 ntBASIC-2.96□□□□□ -2.88
CCDC88AQ3V6T2 Y_RNA.520-201ENST00000384556 102 ntBASIC-2.96□□□□□ -2.88
CCDC88AQ3V6T2 MIR509-1-201ENST00000385265 94 ntBASIC-2.96□□□□□ -2.88
CCDC88AQ3V6T2 MIR509-2-201ENST00000390724 91 ntBASIC-2.96□□□□□ -2.88
CCDC88AQ3V6T2 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.97□□□□□ -2.89
CCDC88AQ3V6T2 RNU7-171P-201ENST00000459581 62 ntBASIC-2.97□□□□□ -2.89
CCDC88AQ3V6T2 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.98□□□□□ -2.89
CCDC88AQ3V6T2 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.99□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.99□□□□□ -2.89
CCDC88AQ3V6T2 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.99□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-1011P-201ENST00000384668 107 ntBASIC-2.99□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-789P-201ENST00000517105 102 ntBASIC-3□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-255P-201ENST00000516957 105 ntBASIC-3.01□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-22P-201ENST00000384355 107 ntBASIC-3.01□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-345P-201ENST00000517001 107 ntBASIC-3.01□□□□□ -2.89
CCDC88AQ3V6T2 MIR1245B-201ENST00000636115 69 ntBASIC-3.01□□□□□ -2.89
CCDC88AQ3V6T2 MIR450A1-201ENST00000362262 91 ntBASIC-3.02□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-1296P-201ENST00000383879 107 ntBASIC-3.02□□□□□ -2.89
CCDC88AQ3V6T2 Y_RNA.703-201ENST00000516846 111 ntBASIC-3.02□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.03□□□□□ -2.89
CCDC88AQ3V6T2 RNU6-300P-201ENST00000459080 104 ntBASIC-3.03□□□□□ -2.89
CCDC88AQ3V6T2 RNU7-119P-201ENST00000459279 63 ntBASIC-3.03□□□□□ -2.89
CCDC88AQ3V6T2 SNORD116.2-201ENST00000391251 93 ntBASIC-3.04□□□□□ -2.9
CCDC88AQ3V6T2 RNU6-590P-201ENST00000365039 107 ntBASIC-3.05□□□□□ -2.9
CCDC88AQ3V6T2 RNU6-794P-201ENST00000517261 64 ntBASIC-3.05□□□□□ -2.9
CCDC88AQ3V6T2 MIR4426-201ENST00000640330 63 ntBASIC-3.05□□□□□ -2.9
CCDC88AQ3V6T2 snoMBII-202.2-201ENST00000517263 86 ntBASIC-3.05□□□□□ -2.9
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms