Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 MIR4712-201ENST00000583750 82 ntBASIC-1.43□□□□□ -2.64
SCN1AP35498 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.43□□□□□ -2.64
SCN1AP35498 MIR23C-201ENST00000579846 100 ntBASIC-1.44□□□□□ -2.64
SCN1AP35498 MIR3123-201ENST00000583417 75 ntBASIC-1.45□□□□□ -2.64
SCN1AP35498 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.45□□□□□ -2.64
SCN1AP35498 RNY4P27-201ENST00000363341 96 ntBASIC-1.45□□□□□ -2.64
SCN1AP35498 MIR520D-201ENST00000385002 87 ntBASIC-1.45□□□□□ -2.64
SCN1AP35498 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.45□□□□□ -2.64
SCN1AP35498 SNORD115-31-201ENST00000365318 82 ntBASIC-1.46□□□□□ -2.64
SCN1AP35498 RNU6-787P-201ENST00000384032 107 ntBASIC-1.46□□□□□ -2.64
SCN1AP35498 MIR548AM-201ENST00000584298 74 ntBASIC-1.46□□□□□ -2.64
SCN1AP35498 SNORA25.5-201ENST00000363782 126 ntBASIC-1.47□□□□□ -2.64
SCN1AP35498 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.47□□□□□ -2.64
SCN1AP35498 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.47□□□□□ -2.64
SCN1AP35498 RNU6-820P-201ENST00000384273 107 ntBASIC-1.47□□□□□ -2.65
SCN1AP35498 SNORD60.1-201ENST00000362451 73 ntBASIC-1.48□□□□□ -2.65
SCN1AP35498 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.48□□□□□ -2.65
SCN1AP35498 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.48□□□□□ -2.65
SCN1AP35498 RNU6-663P-201ENST00000391105 106 ntBASIC-1.48□□□□□ -2.65
SCN1AP35498 RNU6-995P-201ENST00000391244 107 ntBASIC-1.48□□□□□ -2.65
SCN1AP35498 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.48□□□□□ -2.65
SCN1AP35498 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.49□□□□□ -2.65
SCN1AP35498 MIR494-201ENST00000349529 81 ntBASIC-1.49□□□□□ -2.65
SCN1AP35498 RNA5SP405-201ENST00000363059 114 ntBASIC-1.49□□□□□ -2.65
SCN1AP35498 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.49□□□□□ -2.65
SCN1AP35498 RNU6-669P-201ENST00000365575 107 ntBASIC-1.49□□□□□ -2.65
SCN1AP35498 RNU6-895P-201ENST00000384125 103 ntBASIC-1.49□□□□□ -2.65
SCN1AP35498 RNU6-258P-201ENST00000390884 101 ntBASIC-1.49□□□□□ -2.65
SCN1AP35498 RNU6-92P-201ENST00000605893 104 ntBASIC-1.49□□□□□ -2.65
SCN1AP35498 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.5□□□□□ -2.65
SCN1AP35498 RNU6-940P-201ENST00000363433 104 ntBASIC-1.5□□□□□ -2.65
SCN1AP35498 RNU6-563P-201ENST00000364872 108 ntBASIC-1.5□□□□□ -2.65
SCN1AP35498 MIR1255A-201ENST00000408338 113 ntBASIC-1.5□□□□□ -2.65
SCN1AP35498 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.5□□□□□ -2.65
SCN1AP35498 MIR5582-201ENST00000579697 68 ntBASIC-1.5□□□□□ -2.65
SCN1AP35498 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.5□□□□□ -2.65
SCN1AP35498 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.51□□□□□ -2.65
SCN1AP35498 RNU6-980P-201ENST00000516925 103 ntBASIC-1.51□□□□□ -2.65
SCN1AP35498 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.52□□□□□ -2.65
SCN1AP35498 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.52□□□□□ -2.65
SCN1AP35498 RNU6-598P-201ENST00000364017 105 ntBASIC-1.52□□□□□ -2.65
SCN1AP35498 MIR579-201ENST00000385221 98 ntBASIC-1.52□□□□□ -2.65
SCN1AP35498 MIR7978-201ENST00000636158 59 ntBASIC-1.52□□□□□ -2.65
SCN1AP35498 U2.22-201ENST00000636441 106 ntBASIC-1.52□□□□□ -2.65
SCN1AP35498 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.54□□□□□ -2.66
SCN1AP35498 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.54□□□□□ -2.66
SCN1AP35498 SNORD116-24-201ENST00000384549 92 ntBASIC-1.54□□□□□ -2.66
SCN1AP35498 snoU13.10-201ENST00000459301 103 ntBASIC-1.54□□□□□ -2.66
SCN1AP35498 U7.4-201ENST00000614961 63 ntBASIC-1.54□□□□□ -2.66
SCN1AP35498 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.54□□□□□ -2.66
SCN1AP35498 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.55□□□□□ -2.66
SCN1AP35498 SNORD63.2-201ENST00000516303 64 ntBASIC-1.55□□□□□ -2.66
SCN1AP35498 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.55□□□□□ -2.66
SCN1AP35498 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.56□□□□□ -2.66
SCN1AP35498 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.56□□□□□ -2.66
SCN1AP35498 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.57□□□□□ -2.66
SCN1AP35498 RNU6-649P-201ENST00000384463 107 ntBASIC-1.57□□□□□ -2.66
SCN1AP35498 RNU6-172P-201ENST00000411000 93 ntBASIC-1.57□□□□□ -2.66
SCN1AP35498 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.57□□□□□ -2.66
SCN1AP35498 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.57□□□□□ -2.66
SCN1AP35498 RNU6-411P-201ENST00000384451 107 ntBASIC-1.58□□□□□ -2.66
SCN1AP35498 MIR548W-201ENST00000581970 74 ntBASIC-1.58□□□□□ -2.66
SCN1AP35498 MIR125B1-201ENST00000385236 88 ntBASIC-1.59□□□□□ -2.66
SCN1AP35498 SNORD116.2-201ENST00000391251 93 ntBASIC-1.59□□□□□ -2.66
SCN1AP35498 RNU6-523P-201ENST00000516304 54 ntBASIC-1.59□□□□□ -2.66
SCN1AP35498 MIR3134-201ENST00000579433 74 ntBASIC-1.59□□□□□ -2.66
SCN1AP35498 AC062037.1-201ENST00000605302 128 ntBASIC-1.59□□□□□ -2.66
SCN1AP35498 MIR3202-2-201ENST00000635980 79 ntBASIC-1.59□□□□□ -2.66
SCN1AP35498 SNORA27.2-201ENST00000363365 126 ntBASIC-1.59□□□□□ -2.66
SCN1AP35498 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.59□□□□□ -2.66
SCN1AP35498 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.6□□□□□ -2.67
SCN1AP35498 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.6□□□□□ -2.67
SCN1AP35498 RNU6-634P-201ENST00000459134 106 ntBASIC-1.6□□□□□ -2.67
SCN1AP35498 SNORA25.4-201ENST00000363666 124 ntBASIC-1.61□□□□□ -2.67
SCN1AP35498 RNU4-88P-201ENST00000411220 86 ntBASIC-1.61□□□□□ -2.67
SCN1AP35498 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.61□□□□□ -2.67
SCN1AP35498 U6.97-201ENST00000636904 101 ntBASIC-1.61□□□□□ -2.67
SCN1AP35498 RNU6-242P-201ENST00000384359 107 ntBASIC-1.61□□□□□ -2.67
SCN1AP35498 RNU6-279P-201ENST00000391297 101 ntBASIC-1.61□□□□□ -2.67
SCN1AP35498 MIR3139-201ENST00000579145 76 ntBASIC-1.62□□□□□ -2.67
SCN1AP35498 SNORD18C-201ENST00000362704 69 ntBASIC-1.62□□□□□ -2.67
SCN1AP35498 RNU6-974P-201ENST00000384099 108 ntBASIC-1.62□□□□□ -2.67
SCN1AP35498 RNU6-687P-201ENST00000516443 89 ntBASIC-1.63□□□□□ -2.67
SCN1AP35498 RNU7-160P-201ENST00000516660 62 ntBASIC-1.63□□□□□ -2.67
SCN1AP35498 SNORD60-201ENST00000383903 83 ntBASIC-1.64□□□□□ -2.67
SCN1AP35498 RNY3P8-201ENST00000411366 126 ntBASIC-1.64□□□□□ -2.67
SCN1AP35498 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.64□□□□□ -2.67
SCN1AP35498 MIR7110-201ENST00000612638 86 ntBASIC-1.64□□□□□ -2.67
SCN1AP35498 RNU6-194P-201ENST00000363862 105 ntBASIC-1.64□□□□□ -2.67
SCN1AP35498 MIR466-201ENST00000580653 84 ntBASIC-1.64□□□□□ -2.67
SCN1AP35498 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.65□□□□□ -2.67
SCN1AP35498 SNORA40B-201ENST00000385573 128 ntBASIC-1.65□□□□□ -2.67
SCN1AP35498 RNU6-118P-201ENST00000516552 102 ntBASIC-1.65□□□□□ -2.67
SCN1AP35498 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.66□□□□□ -2.67
SCN1AP35498 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.66□□□□□ -2.68
SCN1AP35498 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.66□□□□□ -2.68
SCN1AP35498 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.67□□□□□ -2.68
SCN1AP35498 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.67□□□□□ -2.68
SCN1AP35498 MIR4679-1-201ENST00000637619 75 ntBASIC-1.67□□□□□ -2.68
SCN1AP35498 RNU6-810P-201ENST00000364001 107 ntBASIC-1.67□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms