Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MIR5009-201ENST00000578736 100 ntBASIC-5.21□□□□□ -3.24
HMGA1P17096 SNORD45A-201ENST00000384512 84 ntBASIC-5.23□□□□□ -3.25
HMGA1P17096 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC-5.23□□□□□ -3.25
HMGA1P17096 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-5.23□□□□□ -3.25
HMGA1P17096 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-5.23□□□□□ -3.25
HMGA1P17096 AL158147.1-201ENST00000443970 75 ntBASIC-5.24□□□□□ -3.25
HMGA1P17096 Y_RNA.554-201ENST00000384672 102 ntBASIC-5.25□□□□□ -3.25
HMGA1P17096 RNU6-239P-201ENST00000390990 99 ntBASIC-5.25□□□□□ -3.25
HMGA1P17096 MIR4484-201ENST00000582855 83 ntBASIC-5.25□□□□□ -3.25
HMGA1P17096 Y_RNA.277-201ENST00000364754 102 ntBASIC-5.26□□□□□ -3.25
HMGA1P17096 SNORA40.16-201ENST00000517238 121 ntBASIC-5.26□□□□□ -3.25
HMGA1P17096 RNU6-876P-201ENST00000391295 104 ntBASIC-5.27□□□□□ -3.25
HMGA1P17096 AP001318.4-201ENST00000616637 121 ntBASIC-5.27□□□□□ -3.25
HMGA1P17096 SNORD58C-201ENST00000365223 64 ntBASIC-5.29□□□□□ -3.26
HMGA1P17096 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-5.29□□□□□ -3.26
HMGA1P17096 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-5.29□□□□□ -3.26
HMGA1P17096 RNU6-162P-201ENST00000516228 103 ntBASIC-5.29□□□□□ -3.26
HMGA1P17096 MIR4679-2-201ENST00000578358 77 ntBASIC-5.29□□□□□ -3.26
HMGA1P17096 RNU7-61P-201ENST00000515897 61 ntBASIC-5.3□□□□□ -3.26
HMGA1P17096 RNU6-1219P-201ENST00000516143 112 ntBASIC-5.3□□□□□ -3.26
HMGA1P17096 MIR8053-201ENST00000613344 75 ntBASIC-5.3□□□□□ -3.26
HMGA1P17096 Y_RNA.276-201ENST00000364732 109 ntBASIC-5.31□□□□□ -3.26
HMGA1P17096 AC074348.1-201ENST00000426503 132 ntBASIC-5.31□□□□□ -3.26
HMGA1P17096 RNU7-197P-201ENST00000458836 62 ntBASIC-5.31□□□□□ -3.26
HMGA1P17096 Y_RNA.632-201ENST00000459189 102 ntBASIC-5.31□□□□□ -3.26
HMGA1P17096 SCARNA23-201ENST00000516060 130 ntBASIC-5.31□□□□□ -3.26
HMGA1P17096 RNU6-584P-201ENST00000410350 95 ntBASIC-5.32□□□□□ -3.26
HMGA1P17096 RNU6-379P-201ENST00000363813 104 ntBASIC-5.33□□□□□ -3.26
HMGA1P17096 Y_RNA.387-201ENST00000383918 102 ntBASIC-5.33□□□□□ -3.26
HMGA1P17096 Y_RNA.532-201ENST00000384590 113 ntBASIC-5.33□□□□□ -3.26
HMGA1P17096 RNU7-121P-201ENST00000516604 62 ntBASIC-5.33□□□□□ -3.26
HMGA1P17096 U6atac.1-201ENST00000616025 117 ntBASIC-5.33□□□□□ -3.26
HMGA1P17096 Y_RNA.565-201ENST00000384719 101 ntBASIC-5.34□□□□□ -3.26
HMGA1P17096 RNU7-152P-201ENST00000458982 64 ntBASIC-5.34□□□□□ -3.26
HMGA1P17096 RNU6-574P-201ENST00000384265 107 ntBASIC-5.35□□□□□ -3.27
HMGA1P17096 MTND2P23-201ENST00000422990 651 ntBASIC-5.35□□□□□ -3.27
HMGA1P17096 SNORD116-4-201ENST00000384733 96 ntBASIC-5.36□□□□□ -3.27
HMGA1P17096 Y_RNA.626-201ENST00000411288 95 ntBASIC-5.36□□□□□ -3.27
HMGA1P17096 AL117187.1-201ENST00000555482 181 ntBASIC-5.36□□□□□ -3.27
HMGA1P17096 SNORA63.4-201ENST00000362763 126 ntBASIC-5.38□□□□□ -3.27
HMGA1P17096 RNU6-624P-201ENST00000363411 107 ntBASIC-5.38□□□□□ -3.27
HMGA1P17096 RNU6-267P-201ENST00000516714 103 ntBASIC-5.38□□□□□ -3.27
HMGA1P17096 RNU6-918P-201ENST00000391219 106 ntBASIC-5.39□□□□□ -3.27
HMGA1P17096 RNU6-92P-201ENST00000605893 104 ntBASIC-5.39□□□□□ -3.27
HMGA1P17096 MIR3688-2-201ENST00000636963 87 ntBASIC-5.39□□□□□ -3.27
HMGA1P17096 SNORD60.1-201ENST00000362451 73 ntBASIC-5.4□□□□□ -3.27
HMGA1P17096 RNU6-1211P-201ENST00000459179 105 ntBASIC-5.4□□□□□ -3.27
HMGA1P17096 RNU6-419P-201ENST00000517030 63 ntBASIC-5.4□□□□□ -3.27
HMGA1P17096 MIR4317-201ENST00000637586 65 ntBASIC-5.4□□□□□ -3.27
HMGA1P17096 RNU6-196P-201ENST00000384315 107 ntBASIC-5.41□□□□□ -3.28
HMGA1P17096 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-5.41□□□□□ -3.28
HMGA1P17096 RNU6-402P-201ENST00000410678 103 ntBASIC-5.41□□□□□ -3.28
HMGA1P17096 RNU6-1325P-201ENST00000364905 105 ntBASIC-5.42□□□□□ -3.28
HMGA1P17096 Y_RNA.219-201ENST00000364232 113 ntBASIC-5.43□□□□□ -3.28
HMGA1P17096 RNU6-686P-201ENST00000364839 107 ntBASIC-5.43□□□□□ -3.28
HMGA1P17096 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-5.43□□□□□ -3.28
HMGA1P17096 Y_RNA.58-201ENST00000362807 102 ntBASIC-5.44□□□□□ -3.28
HMGA1P17096 Y_RNA.202-201ENST00000364083 110 ntBASIC-5.44□□□□□ -3.28
HMGA1P17096 MIR664A-201ENST00000626086 82 ntBASIC-5.44□□□□□ -3.28
HMGA1P17096 U7.3-201ENST00000616123 62 ntBASIC-5.45□□□□□ -3.28
HMGA1P17096 AC069439.1-201ENST00000494739 167 ntBASIC-5.46□□□□□ -3.28
HMGA1P17096 Y_RNA.586-201ENST00000391146 98 ntBASIC-5.47□□□□□ -3.29
HMGA1P17096 RNU6-988P-201ENST00000519081 107 ntBASIC-5.47□□□□□ -3.29
HMGA1P17096 RNU6-776P-201ENST00000364403 104 ntBASIC-5.48□□□□□ -3.29
HMGA1P17096 RNU6-1022P-201ENST00000365049 104 ntBASIC-5.48□□□□□ -3.29
HMGA1P17096 AC093729.1-201ENST00000513074 128 ntBASIC-5.48□□□□□ -3.29
HMGA1P17096 RNU6-557P-201ENST00000516842 110 ntBASIC-5.49□□□□□ -3.29
HMGA1P17096 MIR548AI-201ENST00000579940 88 ntBASIC-5.49□□□□□ -3.29
HMGA1P17096 RNU6-904P-201ENST00000516206 101 ntBASIC-5.5□□□□□ -3.29
HMGA1P17096 RNU6-277P-201ENST00000516272 106 ntBASIC-5.5□□□□□ -3.29
HMGA1P17096 MIR1302-1-201ENST00000637932 143 ntBASIC-5.5□□□□□ -3.29
HMGA1P17096 MIRLET7A1-201ENST00000362295 80 ntBASIC-5.51□□□□□ -3.29
HMGA1P17096 U7.2-201ENST00000607576 63 ntBASIC-5.51□□□□□ -3.29
HMGA1P17096 Y_RNA.197-201ENST00000364004 102 ntBASIC-5.52□□□□□ -3.29
HMGA1P17096 RNU2-16P-201ENST00000410712 136 ntBASIC-5.52□□□□□ -3.29
HMGA1P17096 AP001340.1-201ENST00000624405 217 ntBASIC-5.52□□□□□ -3.29
HMGA1P17096 RNU6-979P-201ENST00000383896 107 ntBASIC-5.53□□□□□ -3.29
HMGA1P17096 RNU6-1015P-201ENST00000517121 99 ntBASIC-5.53□□□□□ -3.29
HMGA1P17096 RNU6-1227P-201ENST00000383981 107 ntBASIC-5.54□□□□□ -3.3
HMGA1P17096 SNORD19B-201ENST00000459623 84 ntBASIC-5.54□□□□□ -3.3
HMGA1P17096 RNU6-659P-201ENST00000516454 104 ntBASIC-5.54□□□□□ -3.3
HMGA1P17096 AC113195.1-201ENST00000579952 141 ntBASIC-5.54□□□□□ -3.3
HMGA1P17096 RNU6-633P-201ENST00000362612 103 ntBASIC-5.55□□□□□ -3.3
HMGA1P17096 Y_RNA.160-201ENST00000363677 92 ntBASIC-5.56□□□□□ -3.3
HMGA1P17096 RNU6-895P-201ENST00000384125 103 ntBASIC-5.56□□□□□ -3.3
HMGA1P17096 MIR548H4-201ENST00000408689 111 ntBASIC-5.56□□□□□ -3.3
HMGA1P17096 RNU6-772P-201ENST00000516042 105 ntBASIC-5.56□□□□□ -3.3
HMGA1P17096 MIR1297-201ENST00000637311 77 ntBASIC-5.56□□□□□ -3.3
HMGA1P17096 AL157777.2-201ENST00000258070 137 ntBASIC-5.57□□□□□ -3.3
HMGA1P17096 SNORD116-24-201ENST00000384549 92 ntBASIC-5.57□□□□□ -3.3
HMGA1P17096 Y_RNA.544-201ENST00000384650 113 ntBASIC-5.57□□□□□ -3.3
HMGA1P17096 AC022559.1-201ENST00000520905 205 ntBASIC-5.57□□□□□ -3.3
HMGA1P17096 MIR4801-201ENST00000582704 82 ntBASIC-5.58□□□□□ -3.3
HMGA1P17096 AC139792.2-201ENST00000624218 587 ntBASIC-5.58□□□□□ -3.3
HMGA1P17096 RNU6-713P-201ENST00000384761 107 ntBASIC-5.59□□□□□ -3.3
HMGA1P17096 RNU7-119P-201ENST00000459279 63 ntBASIC-5.59□□□□□ -3.3
HMGA1P17096 RNU6-542P-201ENST00000516405 103 ntBASIC-5.59□□□□□ -3.3
HMGA1P17096 RNU6-718P-201ENST00000516166 105 ntBASIC-5.61□□□□□ -3.31
HMGA1P17096 MIR1277-201ENST00000408536 78 ntBASIC-5.62□□□□□ -3.31
HMGA1P17096 Y_RNA.579-201ENST00000390939 94 ntBASIC-5.63□□□□□ -3.31
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms