Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SNORA41B-201ENST00000384785 128 ntBASIC0.14□□□□□ -2.39
LIG3P49916 AC244250.2-201ENST00000418731 148 ntBASIC0.14□□□□□ -2.39
LIG3P49916 MIR6718-201ENST00000616153 80 ntBASIC0.14□□□□□ -2.39
LIG3P49916 MIR2909-201ENST00000617113 69 ntBASIC0.14□□□□□ -2.39
LIG3P49916 snoR1.1-201ENST00000628177 80 ntBASIC0.14□□□□□ -2.39
LIG3P49916 SNORD115-23-201ENST00000364461 82 ntBASIC0.13□□□□□ -2.39
LIG3P49916 RNU6-455P-201ENST00000384681 107 ntBASIC0.13□□□□□ -2.39
LIG3P49916 RNU7-154P-201ENST00000516194 62 ntBASIC0.13□□□□□ -2.39
LIG3P49916 AL353803.5-201ENST00000599815 141 ntBASIC0.13□□□□□ -2.39
LIG3P49916 MIR8068-201ENST00000618032 68 ntBASIC0.13□□□□□ -2.39
LIG3P49916 SNORA25.5-201ENST00000363782 126 ntBASIC0.12□□□□□ -2.39
LIG3P49916 RNU6-900P-201ENST00000384498 102 ntBASIC0.12□□□□□ -2.39
LIG3P49916 AC110620.1-201ENST00000416042 228 ntBASIC0.11□□□□□ -2.39
LIG3P49916 Y_RNA.68-201ENST00000362881 102 ntBASIC0.1□□□□□ -2.39
LIG3P49916 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.1□□□□□ -2.39
LIG3P49916 RNU6-1133P-201ENST00000410963 100 ntBASIC0.1□□□□□ -2.39
LIG3P49916 MIR655-201ENST00000362159 97 ntBASIC0.09□□□□□ -2.4
LIG3P49916 SNORD60.1-201ENST00000362451 73 ntBASIC0.09□□□□□ -2.4
LIG3P49916 SNORD56B-201ENST00000384713 71 ntBASIC0.09□□□□□ -2.4
LIG3P49916 RNU7-55P-201ENST00000459426 62 ntBASIC0.09□□□□□ -2.4
LIG3P49916 Y_RNA.698-201ENST00000516798 118 ntBASIC0.09□□□□□ -2.4
LIG3P49916 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.09□□□□□ -2.4
LIG3P49916 MIR4464-201ENST00000580818 92 ntBASIC0.09□□□□□ -2.4
LIG3P49916 AL391099.1-201ENST00000624635 187 ntBASIC0.09□□□□□ -2.4
LIG3P49916 Y_RNA.282-201ENST00000364793 102 ntBASIC0.08□□□□□ -2.4
LIG3P49916 RNU6-46P-201ENST00000383860 107 ntBASIC0.08□□□□□ -2.4
LIG3P49916 MIR633-201ENST00000384821 98 ntBASIC0.08□□□□□ -2.4
LIG3P49916 MIR4432-201ENST00000581823 84 ntBASIC0.08□□□□□ -2.4
LIG3P49916 RNU6-92P-201ENST00000605893 104 ntBASIC0.08□□□□□ -2.4
LIG3P49916 MIR6888-201ENST00000621977 67 ntBASIC0.08□□□□□ -2.4
LIG3P49916 AL445193.1-201ENST00000441183 141 ntBASIC0.07□□□□□ -2.4
LIG3P49916 MIR4768-201ENST00000585270 74 ntBASIC0.07□□□□□ -2.4
LIG3P49916 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.07□□□□□ -2.4
LIG3P49916 Y_RNA.109-201ENST00000363215 102 ntBASIC0.06□□□□□ -2.4
LIG3P49916 RNU6-973P-201ENST00000364690 107 ntBASIC0.06□□□□□ -2.4
LIG3P49916 MIR527-201ENST00000385244 85 ntBASIC0.06□□□□□ -2.4
LIG3P49916 MIR466-201ENST00000580653 84 ntBASIC0.06□□□□□ -2.4
LIG3P49916 MIR5190-201ENST00000581537 80 ntBASIC0.06□□□□□ -2.4
LIG3P49916 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.06□□□□□ -2.4
LIG3P49916 RNU6-1079P-201ENST00000362861 110 ntBASIC0.05□□□□□ -2.4
LIG3P49916 Y_RNA.74-201ENST00000362911 99 ntBASIC0.05□□□□□ -2.4
LIG3P49916 RNU6-246P-201ENST00000384702 107 ntBASIC0.05□□□□□ -2.4
LIG3P49916 AC104692.1-201ENST00000472406 90 ntBASIC0.05□□□□□ -2.4
LIG3P49916 MIR4290-201ENST00000583807 95 ntBASIC0.04□□□□□ -2.4
LIG3P49916 RNA5SP285-201ENST00000516619 119 ntBASIC0.03□□□□□ -2.4
LIG3P49916 RNU6-458P-201ENST00000384179 107 ntBASIC0.02□□□□□ -2.41
LIG3P49916 AC096531.1-201ENST00000419107 107 ntBASIC0.02□□□□□ -2.41
LIG3P49916 RNU7-88P-201ENST00000458752 63 ntBASIC0.02□□□□□ -2.41
LIG3P49916 RNU6-122P-201ENST00000516818 107 ntBASIC0.02□□□□□ -2.41
LIG3P49916 U6.58-201ENST00000613107 107 ntBASIC0.02□□□□□ -2.41
LIG3P49916 AL445584.3-201ENST00000617173 78 ntBASIC0.02□□□□□ -2.41
LIG3P49916 MIR371B-201ENST00000638082 66 ntBASIC0.02□□□□□ -2.41
LIG3P49916 Y_RNA.236-201ENST00000364427 111 ntBASIC0.01□□□□□ -2.41
LIG3P49916 RNU6-901P-201ENST00000384593 106 ntBASIC0.01□□□□□ -2.41
LIG3P49916 AC114755.3-201ENST00000481111 251 ntBASIC0.01□□□□□ -2.41
LIG3P49916 SNORD38.3-201ENST00000516599 73 ntBASIC0.01□□□□□ -2.41
LIG3P49916 AC108676.2-201ENST00000605225 163 ntBASIC0.01□□□□□ -2.41
LIG3P49916 RNU6-446P-201ENST00000362827 106 ntBASIC0□□□□□ -2.41
LIG3P49916 SNORD114-16-201ENST00000363044 70 ntBASIC0□□□□□ -2.41
LIG3P49916 SNORD49B-201ENST00000365172 72 ntBASIC0□□□□□ -2.41
LIG3P49916 SNORD116-16-201ENST00000384533 92 ntBASIC0□□□□□ -2.41
LIG3P49916 MIR329-2-201ENST00000385029 84 ntBASIC0□□□□□ -2.41
LIG3P49916 MIR4280-201ENST00000582178 76 ntBASIC0□□□□□ -2.41
LIG3P49916 U2.18-201ENST00000622185 84 ntBASIC0□□□□□ -2.41
LIG3P49916 SNORD1B-201ENST00000363091 84 ntBASIC-0.01□□□□□ -2.41
LIG3P49916 SNORA62.4-201ENST00000365504 151 ntBASIC-0.01□□□□□ -2.41
LIG3P49916 RNU6-669P-201ENST00000365575 107 ntBASIC-0.01□□□□□ -2.41
LIG3P49916 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.01□□□□□ -2.41
LIG3P49916 MIR124-2-201ENST00000385081 109 ntBASIC-0.01□□□□□ -2.41
LIG3P49916 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
LIG3P49916 RNU6-940P-201ENST00000363433 104 ntBASIC-0.02□□□□□ -2.41
LIG3P49916 RNU6-598P-201ENST00000364017 105 ntBASIC-0.02□□□□□ -2.41
LIG3P49916 U7.5-201ENST00000517224 61 ntBASIC-0.02□□□□□ -2.41
LIG3P49916 MIR6854-201ENST00000614935 69 ntBASIC-0.02□□□□□ -2.41
LIG3P49916 RNU6-829P-201ENST00000363700 112 ntBASIC-0.03□□□□□ -2.41
LIG3P49916 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.04□□□□□ -2.42
LIG3P49916 SNORD114-12-201ENST00000365400 75 ntBASIC-0.04□□□□□ -2.42
LIG3P49916 MIR3938-201ENST00000582157 103 ntBASIC-0.04□□□□□ -2.42
LIG3P49916 AL590491.3-201ENST00000610731 82 ntBASIC-0.04□□□□□ -2.42
LIG3P49916 MIR1295B-201ENST00000636144 60 ntBASIC-0.04□□□□□ -2.42
LIG3P49916 SNORD113-4-201ENST00000364802 75 ntBASIC-0.05□□□□□ -2.42
LIG3P49916 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.05□□□□□ -2.42
LIG3P49916 MIR579-201ENST00000385221 98 ntBASIC-0.05□□□□□ -2.42
LIG3P49916 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
LIG3P49916 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
LIG3P49916 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.05□□□□□ -2.42
LIG3P49916 RNA5SP169-201ENST00000517268 117 ntBASIC-0.05□□□□□ -2.42
LIG3P49916 MIR429-201ENST00000362106 83 ntBASIC-0.06□□□□□ -2.42
LIG3P49916 SNORD114-11-201ENST00000363738 75 ntBASIC-0.06□□□□□ -2.42
LIG3P49916 RNU6-231P-201ENST00000517122 103 ntBASIC-0.06□□□□□ -2.42
LIG3P49916 RNU6-499P-201ENST00000365615 107 ntBASIC-0.07□□□□□ -2.42
LIG3P49916 SNORD116.2-201ENST00000391251 93 ntBASIC-0.07□□□□□ -2.42
LIG3P49916 RNU6-172P-201ENST00000411000 93 ntBASIC-0.07□□□□□ -2.42
LIG3P49916 AC079150.2-201ENST00000443733 78 ntBASIC-0.07□□□□□ -2.42
LIG3P49916 MIR6759-201ENST00000638110 65 ntBASIC-0.07□□□□□ -2.42
LIG3P49916 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.08□□□□□ -2.42
LIG3P49916 SNORA18.1-201ENST00000363418 128 ntBASIC-0.09□□□□□ -2.42
LIG3P49916 MIR4263-201ENST00000584745 83 ntBASIC-0.09□□□□□ -2.42
LIG3P49916 MIR6851-201ENST00000617060 67 ntBASIC-0.09□□□□□ -2.42
LIG3P49916 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.1□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 248.5 ms