Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.68□□□□□ -2.14
TRIM35Q9UPQ4 SNORD63.2-201ENST00000516303 64 ntBASIC1.68□□□□□ -2.14
TRIM35Q9UPQ4 Y_RNA.321-201ENST00000365149 102 ntBASIC1.67□□□□□ -2.14
TRIM35Q9UPQ4 SNORA2A-201ENST00000383885 135 ntBASIC1.67□□□□□ -2.14
TRIM35Q9UPQ4 MIR618-201ENST00000385287 98 ntBASIC1.67□□□□□ -2.14
TRIM35Q9UPQ4 RNU7-88P-201ENST00000458752 63 ntBASIC1.67□□□□□ -2.14
TRIM35Q9UPQ4 RNU6-1174P-201ENST00000517278 101 ntBASIC1.67□□□□□ -2.14
TRIM35Q9UPQ4 AL353770.2-201ENST00000620024 78 ntBASIC1.67□□□□□ -2.14
TRIM35Q9UPQ4 RNU6-1326P-201ENST00000391262 107 ntBASIC1.66□□□□□ -2.14
TRIM35Q9UPQ4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.66□□□□□ -2.14
TRIM35Q9UPQ4 MIR7974-201ENST00000615835 79 ntBASIC1.66□□□□□ -2.14
TRIM35Q9UPQ4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.14
TRIM35Q9UPQ4 RNU6-321P-201ENST00000410912 106 ntBASIC1.65□□□□□ -2.15
TRIM35Q9UPQ4 RNA5SP222-201ENST00000411039 105 ntBASIC1.65□□□□□ -2.15
TRIM35Q9UPQ4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC1.65□□□□□ -2.15
TRIM35Q9UPQ4 RNU6-229P-201ENST00000516614 102 ntBASIC1.65□□□□□ -2.15
TRIM35Q9UPQ4 MIR4677-201ENST00000584153 80 ntBASIC1.65□□□□□ -2.15
TRIM35Q9UPQ4 MIR3170-201ENST00000582699 77 ntBASIC1.64□□□□□ -2.15
TRIM35Q9UPQ4 Y_RNA.355-201ENST00000365462 98 ntBASIC1.63□□□□□ -2.15
TRIM35Q9UPQ4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.63□□□□□ -2.15
TRIM35Q9UPQ4 RNA5SP517-201ENST00000364724 117 ntBASIC1.62□□□□□ -2.15
TRIM35Q9UPQ4 RNU6-955P-201ENST00000410497 104 ntBASIC1.62□□□□□ -2.15
TRIM35Q9UPQ4 AC084368.1-201ENST00000620935 65 ntBASIC1.62□□□□□ -2.15
TRIM35Q9UPQ4 snoR1.1-201ENST00000628177 80 ntBASIC1.62□□□□□ -2.15
TRIM35Q9UPQ4 Y_RNA.345-201ENST00000365384 92 ntBASIC1.61□□□□□ -2.15
TRIM35Q9UPQ4 RPS29P23-201ENST00000458635 123 ntBASIC1.61□□□□□ -2.15
TRIM35Q9UPQ4 MIR4317-201ENST00000637586 65 ntBASIC1.61□□□□□ -2.15
TRIM35Q9UPQ4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.6□□□□□ -2.15
TRIM35Q9UPQ4 MIR499A-201ENST00000384903 122 ntBASIC1.6□□□□□ -2.15
TRIM35Q9UPQ4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.6□□□□□ -2.15
TRIM35Q9UPQ4 RNU1-124P-201ENST00000363861 145 ntBASIC1.59□□□□□ -2.15
TRIM35Q9UPQ4 RNU6-392P-201ENST00000364926 101 ntBASIC1.59□□□□□ -2.15
TRIM35Q9UPQ4 RN7SL660P-201ENST00000614852 299 ntBASIC1.59□□□□□ -2.15
TRIM35Q9UPQ4 MIR6888-201ENST00000621977 67 ntBASIC1.59□□□□□ -2.15
TRIM35Q9UPQ4 Y_RNA.206-201ENST00000364136 102 ntBASIC1.58□□□□□ -2.16
TRIM35Q9UPQ4 MIR501-201ENST00000390204 84 ntBASIC1.58□□□□□ -2.16
TRIM35Q9UPQ4 RNU6-1232P-201ENST00000516299 86 ntBASIC1.58□□□□□ -2.16
TRIM35Q9UPQ4 MIR4464-201ENST00000580818 92 ntBASIC1.58□□□□□ -2.16
TRIM35Q9UPQ4 SNORA25.18-201ENST00000607153 114 ntBASIC1.58□□□□□ -2.16
TRIM35Q9UPQ4 Y_RNA.423-201ENST00000384057 113 ntBASIC1.56□□□□□ -2.16
TRIM35Q9UPQ4 RNU6-1111P-201ENST00000391118 107 ntBASIC1.56□□□□□ -2.16
TRIM35Q9UPQ4 TRMT112P2-201ENST00000512910 132 ntBASIC1.56□□□□□ -2.16
TRIM35Q9UPQ4 RNA5SP404-201ENST00000517118 132 ntBASIC1.56□□□□□ -2.16
TRIM35Q9UPQ4 AP000676.1-201ENST00000533307 52 ntBASIC1.56□□□□□ -2.16
TRIM35Q9UPQ4 AC104408.1-201ENST00000605241 170 ntBASIC1.56□□□□□ -2.16
TRIM35Q9UPQ4 RNU6-133P-201ENST00000383989 107 ntBASIC1.55□□□□□ -2.16
TRIM35Q9UPQ4 SNORD26-201ENST00000384147 75 ntBASIC1.55□□□□□ -2.16
TRIM35Q9UPQ4 MIR6507-201ENST00000613630 70 ntBASIC1.55□□□□□ -2.16
TRIM35Q9UPQ4 MIR8070-201ENST00000616510 88 ntBASIC1.55□□□□□ -2.16
TRIM35Q9UPQ4 AL445584.3-201ENST00000617173 78 ntBASIC1.55□□□□□ -2.16
TRIM35Q9UPQ4 SNORD118-201ENST00000363593 134 ntBASIC1.54□□□□□ -2.16
TRIM35Q9UPQ4 MIR489-201ENST00000384923 84 ntBASIC1.54□□□□□ -2.16
TRIM35Q9UPQ4 RNU6-1047P-201ENST00000364418 107 ntBASIC1.53□□□□□ -2.16
TRIM35Q9UPQ4 MIR1468-201ENST00000410600 86 ntBASIC1.53□□□□□ -2.16
TRIM35Q9UPQ4 snoU13.18-201ENST00000459483 104 ntBASIC1.53□□□□□ -2.16
TRIM35Q9UPQ4 ACA64.5-201ENST00000516207 127 ntBASIC1.53□□□□□ -2.16
TRIM35Q9UPQ4 SNORA62.4-201ENST00000365504 151 ntBASIC1.52□□□□□ -2.17
TRIM35Q9UPQ4 AL353765.1-201ENST00000605514 183 ntBASIC1.52□□□□□ -2.17
TRIM35Q9UPQ4 SNORA36.2-201ENST00000384004 127 ntBASIC1.51□□□□□ -2.17
TRIM35Q9UPQ4 MIR106A-201ENST00000384870 81 ntBASIC1.51□□□□□ -2.17
TRIM35Q9UPQ4 RNU6-848P-201ENST00000515948 107 ntBASIC1.51□□□□□ -2.17
TRIM35Q9UPQ4 RNU6-617P-201ENST00000516147 107 ntBASIC1.51□□□□□ -2.17
TRIM35Q9UPQ4 RNU6-473P-201ENST00000516164 107 ntBASIC1.51□□□□□ -2.17
TRIM35Q9UPQ4 RNU6-1049P-201ENST00000516414 107 ntBASIC1.51□□□□□ -2.17
TRIM35Q9UPQ4 MIR140-201ENST00000385282 100 ntBASIC1.5□□□□□ -2.17
TRIM35Q9UPQ4 MIR876-201ENST00000401147 81 ntBASIC1.5□□□□□ -2.17
TRIM35Q9UPQ4 SNORA40.8-201ENST00000411034 126 ntBASIC1.5□□□□□ -2.17
TRIM35Q9UPQ4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
TRIM35Q9UPQ4 Y_RNA.613-201ENST00000410726 97 ntBASIC1.49□□□□□ -2.17
TRIM35Q9UPQ4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
TRIM35Q9UPQ4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
TRIM35Q9UPQ4 RNU6-1238P-201ENST00000517215 102 ntBASIC1.46□□□□□ -2.18
TRIM35Q9UPQ4 MIR3925-201ENST00000584674 77 ntBASIC1.46□□□□□ -2.18
TRIM35Q9UPQ4 MIR6078-201ENST00000611069 100 ntBASIC1.46□□□□□ -2.18
TRIM35Q9UPQ4 MIR6755-201ENST00000619993 66 ntBASIC1.46□□□□□ -2.18
TRIM35Q9UPQ4 MIR4426-201ENST00000640330 63 ntBASIC1.46□□□□□ -2.18
TRIM35Q9UPQ4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
TRIM35Q9UPQ4 SNORD111B-201ENST00000408587 80 ntBASIC1.45□□□□□ -2.18
TRIM35Q9UPQ4 MIR96-201ENST00000362288 78 ntBASIC1.44□□□□□ -2.18
TRIM35Q9UPQ4 MIR760-201ENST00000390220 80 ntBASIC1.44□□□□□ -2.18
TRIM35Q9UPQ4 SNORD71-201ENST00000411292 86 ntBASIC1.44□□□□□ -2.18
TRIM35Q9UPQ4 AL391099.1-201ENST00000624635 187 ntBASIC1.44□□□□□ -2.18
TRIM35Q9UPQ4 RNU6-258P-201ENST00000390884 101 ntBASIC1.43□□□□□ -2.18
TRIM35Q9UPQ4 RNU6-732P-201ENST00000516033 103 ntBASIC1.43□□□□□ -2.18
TRIM35Q9UPQ4 SNORA27.2-201ENST00000363365 126 ntBASIC1.42□□□□□ -2.18
TRIM35Q9UPQ4 RNU6-1133P-201ENST00000410963 100 ntBASIC1.42□□□□□ -2.18
TRIM35Q9UPQ4 MIR6767-201ENST00000637302 66 ntBASIC1.42□□□□□ -2.18
TRIM35Q9UPQ4 Y_RNA.699-201ENST00000516803 93 ntBASIC1.41□□□□□ -2.18
TRIM35Q9UPQ4 SNORD114-21-201ENST00000606412 72 ntBASIC1.41□□□□□ -2.18
TRIM35Q9UPQ4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.41□□□□□ -2.18
TRIM35Q9UPQ4 RNA5SP98-201ENST00000363158 137 ntBASIC1.4□□□□□ -2.19
TRIM35Q9UPQ4 RNU6-485P-201ENST00000363475 107 ntBASIC1.4□□□□□ -2.19
TRIM35Q9UPQ4 uc_338.36-201ENST00000622331 158 ntBASIC1.4□□□□□ -2.19
TRIM35Q9UPQ4 MIR26B-201ENST00000362251 77 ntBASIC1.39□□□□□ -2.19
TRIM35Q9UPQ4 RNA5SP128-201ENST00000365305 116 ntBASIC1.39□□□□□ -2.19
TRIM35Q9UPQ4 MIR518A1-201ENST00000385068 85 ntBASIC1.39□□□□□ -2.19
TRIM35Q9UPQ4 RNU4-54P-201ENST00000516428 129 ntBASIC1.39□□□□□ -2.19
TRIM35Q9UPQ4 RNU6-973P-201ENST00000364690 107 ntBASIC1.38□□□□□ -2.19
TRIM35Q9UPQ4 MIR1276-201ENST00000408707 83 ntBASIC1.38□□□□□ -2.19
TRIM35Q9UPQ4 RNA5SP102-201ENST00000516865 106 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms