Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU7-30P-201ENST00000516835 62 ntBASIC-3.59□□□□□ -2.98
CUX1P39880 MIR548V-201ENST00000584165 80 ntBASIC-3.59□□□□□ -2.98
CUX1P39880 AC025166.1-201ENST00000612411 163 ntBASIC-3.59□□□□□ -2.98
CUX1P39880 Y_RNA.139-201ENST00000363464 102 ntBASIC-3.6□□□□□ -2.98
CUX1P39880 Y_RNA.455-201ENST00000384230 98 ntBASIC-3.6□□□□□ -2.98
CUX1P39880 Y_RNA.553-201ENST00000384670 102 ntBASIC-3.6□□□□□ -2.98
CUX1P39880 AC006362.1-201ENST00000567392 174 ntBASIC-3.6□□□□□ -2.98
CUX1P39880 Y_RNA.590-201ENST00000410140 107 ntBASIC-3.6□□□□□ -2.99
CUX1P39880 RNU5E-3P-201ENST00000515913 68 ntBASIC-3.6□□□□□ -2.99
CUX1P39880 RNU6-314P-201ENST00000516574 104 ntBASIC-3.6□□□□□ -2.99
CUX1P39880 Y_RNA.89-201ENST00000363031 102 ntBASIC-3.61□□□□□ -2.99
CUX1P39880 RNU6-813P-201ENST00000384691 107 ntBASIC-3.61□□□□□ -2.99
CUX1P39880 MIR630-201ENST00000384957 97 ntBASIC-3.62□□□□□ -2.99
CUX1P39880 AL450471.1-201ENST00000447509 127 ntBASIC-3.62□□□□□ -2.99
CUX1P39880 Y_RNA.686-201ENST00000516548 134 ntBASIC-3.62□□□□□ -2.99
CUX1P39880 RNU6-770P-201ENST00000363929 105 ntBASIC-3.63□□□□□ -2.99
CUX1P39880 AC103810.7-201ENST00000607821 91 ntBASIC-3.63□□□□□ -2.99
CUX1P39880 SNORA41B-201ENST00000384785 128 ntBASIC-3.64□□□□□ -2.99
CUX1P39880 MIR1302-11-201ENST00000408051 138 ntBASIC-3.64□□□□□ -2.99
CUX1P39880 MIR1302-9-201ENST00000408365 138 ntBASIC-3.64□□□□□ -2.99
CUX1P39880 MIR1302-10-201ENST00000408734 138 ntBASIC-3.64□□□□□ -2.99
CUX1P39880 MIR1302-2-201ENST00000607096 138 ntBASIC-3.64□□□□□ -2.99
CUX1P39880 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-3.64□□□□□ -2.99
CUX1P39880 Y_RNA.252-201ENST00000364556 101 ntBASIC-3.65□□□□□ -2.99
CUX1P39880 Y_RNA.337-201ENST00000365312 102 ntBASIC-3.65□□□□□ -2.99
CUX1P39880 Y_RNA.129-201ENST00000363392 110 ntBASIC-3.65□□□□□ -2.99
CUX1P39880 Y_RNA.158-201ENST00000363651 101 ntBASIC-3.65□□□□□ -2.99
CUX1P39880 Y_RNA.166-201ENST00000363730 102 ntBASIC-3.66□□□□□ -3
CUX1P39880 Y_RNA.573-201ENST00000384763 105 ntBASIC-3.66□□□□□ -3
CUX1P39880 MIR4694-201ENST00000578534 80 ntBASIC-3.66□□□□□ -3
CUX1P39880 RNY4P18-201ENST00000391107 89 ntBASIC-3.67□□□□□ -3
CUX1P39880 MIR548P-201ENST00000408336 84 ntBASIC-3.67□□□□□ -3
CUX1P39880 RNU6-275P-201ENST00000364910 107 ntBASIC-3.68□□□□□ -3
CUX1P39880 Y_RNA.320-201ENST00000365144 102 ntBASIC-3.68□□□□□ -3
CUX1P39880 RNU6-1318P-201ENST00000365389 103 ntBASIC-3.68□□□□□ -3
CUX1P39880 SNORD115-45-201ENST00000391078 81 ntBASIC-3.68□□□□□ -3
CUX1P39880 MIR1263-201ENST00000408324 86 ntBASIC-3.68□□□□□ -3
CUX1P39880 Y_RNA.661-201ENST00000516003 99 ntBASIC-3.68□□□□□ -3
CUX1P39880 Y_RNA.9-201ENST00000362354 101 ntBASIC-3.69□□□□□ -3
CUX1P39880 SNORD45B-201ENST00000364617 72 ntBASIC-3.69□□□□□ -3
CUX1P39880 RNU6-172P-201ENST00000411000 93 ntBASIC-3.69□□□□□ -3
CUX1P39880 RNY3P16-201ENST00000516338 101 ntBASIC-3.69□□□□□ -3
CUX1P39880 MIR3613-201ENST00000579844 87 ntBASIC-3.69□□□□□ -3
CUX1P39880 MIR4796-201ENST00000580742 81 ntBASIC-3.69□□□□□ -3
CUX1P39880 RNU4-11P-201ENST00000365287 132 ntBASIC-3.7□□□□□ -3
CUX1P39880 AC078883.4-201ENST00000623218 367 ntBASIC-3.7□□□□□ -3
CUX1P39880 Y_RNA.84-201ENST00000363011 104 ntBASIC-3.7□□□□□ -3
CUX1P39880 RNU6-665P-201ENST00000384639 107 ntBASIC-3.7□□□□□ -3
CUX1P39880 MTND4P17-201ENST00000470444 350 ntBASIC-3.7□□□□□ -3
CUX1P39880 RNU6-1169P-201ENST00000363537 103 ntBASIC-3.71□□□□□ -3
CUX1P39880 Y_RNA.187-201ENST00000363918 113 ntBASIC-3.71□□□□□ -3
CUX1P39880 RNY3P15-201ENST00000516297 97 ntBASIC-3.71□□□□□ -3
CUX1P39880 AC090582.1-201ENST00000636321 199 ntBASIC-3.71□□□□□ -3
CUX1P39880 RNU6-1143P-201ENST00000516125 104 ntBASIC-3.72□□□□□ -3.01
CUX1P39880 RNU6-506P-201ENST00000516553 94 ntBASIC-3.72□□□□□ -3.01
CUX1P39880 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-3.72□□□□□ -3.01
CUX1P39880 Y_RNA.95-201ENST00000363079 95 ntBASIC-3.73□□□□□ -3.01
CUX1P39880 MIR1236-201ENST00000408340 102 ntBASIC-3.73□□□□□ -3.01
CUX1P39880 RNU6-1161P-201ENST00000516176 102 ntBASIC-3.73□□□□□ -3.01
CUX1P39880 Y_RNA.384-201ENST00000383909 102 ntBASIC-3.74□□□□□ -3.01
CUX1P39880 MTND1P19-201ENST00000511780 315 ntBASIC-3.74□□□□□ -3.01
CUX1P39880 SNORA40.15-201ENST00000516884 107 ntBASIC-3.74□□□□□ -3.01
CUX1P39880 Y_RNA.19-201ENST00000362462 99 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 RNY3P2-201ENST00000362918 102 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 RNU6-590P-201ENST00000365039 107 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 RNU6-982P-201ENST00000516216 102 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 MIR3611-201ENST00000584484 83 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 SNORD58A-201ENST00000383875 65 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 MIR1252-201ENST00000408861 65 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 Y_RNA.649-201ENST00000459077 103 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 AC113139.1-201ENST00000605049 239 ntBASIC-3.75□□□□□ -3.01
CUX1P39880 RNA5SP215-201ENST00000363440 122 ntBASIC-3.76□□□□□ -3.01
CUX1P39880 Y_RNA.309-201ENST00000365046 111 ntBASIC-3.76□□□□□ -3.01
CUX1P39880 AL160413.1-201ENST00000622780 310 ntBASIC-3.76□□□□□ -3.01
CUX1P39880 Y_RNA.240-201ENST00000364469 95 ntBASIC-3.77□□□□□ -3.01
CUX1P39880 Y_RNA.292-201ENST00000364904 97 ntBASIC-3.77□□□□□ -3.01
CUX1P39880 RNU6-806P-201ENST00000365147 105 ntBASIC-3.77□□□□□ -3.01
CUX1P39880 MIR124-1-201ENST00000385275 85 ntBASIC-3.77□□□□□ -3.01
CUX1P39880 RNU6-300P-201ENST00000459080 104 ntBASIC-3.77□□□□□ -3.01
CUX1P39880 MIR3675-201ENST00000583661 73 ntBASIC-3.77□□□□□ -3.01
CUX1P39880 RNU6-554P-201ENST00000410466 106 ntBASIC-3.78□□□□□ -3.01
CUX1P39880 Y_RNA.718-201ENST00000517110 102 ntBASIC-3.78□□□□□ -3.01
CUX1P39880 Y_RNA.11-201ENST00000362375 109 ntBASIC-3.79□□□□□ -3.02
CUX1P39880 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.79□□□□□ -3.02
CUX1P39880 Y_RNA.563-201ENST00000384707 108 ntBASIC-3.79□□□□□ -3.02
CUX1P39880 RNU6-129P-201ENST00000391022 107 ntBASIC-3.79□□□□□ -3.02
CUX1P39880 RNU6-493P-201ENST00000391321 108 ntBASIC-3.79□□□□□ -3.02
CUX1P39880 AC130289.1-201ENST00000577321 73 ntBASIC-3.79□□□□□ -3.02
CUX1P39880 MIR4426-201ENST00000640330 63 ntBASIC-3.79□□□□□ -3.02
CUX1P39880 RNU6-823P-201ENST00000391042 103 ntBASIC-3.8□□□□□ -3.02
CUX1P39880 MTND4LP32-201ENST00000636111 270 ntBASIC-3.8□□□□□ -3.02
CUX1P39880 Y_RNA.435-201ENST00000384095 112 ntBASIC-3.8□□□□□ -3.02
CUX1P39880 SNORD77.2-201ENST00000391045 68 ntBASIC-3.8□□□□□ -3.02
CUX1P39880 RNU6-176P-201ENST00000517196 105 ntBASIC-3.8□□□□□ -3.02
CUX1P39880 Y_RNA.29-201ENST00000362570 113 ntBASIC-3.81□□□□□ -3.02
CUX1P39880 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.81□□□□□ -3.02
CUX1P39880 Y_RNA.259-201ENST00000364619 101 ntBASIC-3.81□□□□□ -3.02
CUX1P39880 RNU6-1153P-201ENST00000516760 105 ntBASIC-3.81□□□□□ -3.02
CUX1P39880 Y_RNA.264-201ENST00000364665 102 ntBASIC-3.82□□□□□ -3.02
CUX1P39880 Y_RNA.26-201ENST00000362539 101 ntBASIC-3.83□□□□□ -3.02
Retrieved 100 of 98,524 protein–RNA pairs in 235.5 ms