Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.63■□□□□ 0.89
COPB1P53618 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
COPB1P53618 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
COPB1P53618 NOC2LP2-201ENST00000407594 1944 ntBASIC20.63■□□□□ 0.89
COPB1P53618 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.63■□□□□ 0.89
COPB1P53618 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
COPB1P53618 KRT16P5-201ENST00000455284 522 ntBASIC20.63■□□□□ 0.89
COPB1P53618 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.63■□□□□ 0.89
COPB1P53618 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.63■□□□□ 0.89
COPB1P53618 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
COPB1P53618 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.62■□□□□ 0.89
COPB1P53618 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
COPB1P53618 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.62■□□□□ 0.89
COPB1P53618 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.62■□□□□ 0.89
COPB1P53618 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.62■□□□□ 0.89
COPB1P53618 AC239809.2-201ENST00000415381 517 ntBASIC20.62■□□□□ 0.89
COPB1P53618 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
COPB1P53618 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.62■□□□□ 0.89
COPB1P53618 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.62■□□□□ 0.89
COPB1P53618 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COPB1P53618 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.61■□□□□ 0.89
COPB1P53618 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.61■□□□□ 0.89
COPB1P53618 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.61■□□□□ 0.89
COPB1P53618 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.61■□□□□ 0.89
COPB1P53618 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.61■□□□□ 0.89
COPB1P53618 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
COPB1P53618 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.61■□□□□ 0.89
COPB1P53618 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.61■□□□□ 0.89
COPB1P53618 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.61■□□□□ 0.89
COPB1P53618 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
COPB1P53618 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.61■□□□□ 0.89
COPB1P53618 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.61■□□□□ 0.89
COPB1P53618 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.61■□□□□ 0.89
COPB1P53618 KRT8P32-201ENST00000512863 1461 ntBASIC20.61■□□□□ 0.89
COPB1P53618 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.61■□□□□ 0.89
COPB1P53618 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
COPB1P53618 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.61■□□□□ 0.89
COPB1P53618 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COPB1P53618 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
COPB1P53618 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COPB1P53618 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.6■□□□□ 0.89
COPB1P53618 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.6■□□□□ 0.89
COPB1P53618 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.6■□□□□ 0.89
COPB1P53618 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
COPB1P53618 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.6■□□□□ 0.89
COPB1P53618 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.6■□□□□ 0.89
COPB1P53618 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.6■□□□□ 0.89
COPB1P53618 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 AL445675.2-201ENST00000620291 557 ntBASIC20.6■□□□□ 0.89
COPB1P53618 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.6■□□□□ 0.89
COPB1P53618 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.6■□□□□ 0.89
COPB1P53618 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COPB1P53618 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.6■□□□□ 0.89
COPB1P53618 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms