Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR6504-201ENST00000613520 61 ntBASIC1.05□□□□□ -2.24
HIF3AQ9Y2N7 U6.96-201ENST00000636425 70 ntBASIC1.05□□□□□ -2.24
HIF3AQ9Y2N7 RNA5SP517-201ENST00000364724 117 ntBASIC1.04□□□□□ -2.24
HIF3AQ9Y2N7 MIR1276-201ENST00000408707 83 ntBASIC1.04□□□□□ -2.24
HIF3AQ9Y2N7 HMGN2P22-201ENST00000427588 175 ntBASIC1.04□□□□□ -2.24
HIF3AQ9Y2N7 snoU13.18-201ENST00000459483 104 ntBASIC1.04□□□□□ -2.24
HIF3AQ9Y2N7 MIR6734-201ENST00000621166 68 ntBASIC1.04□□□□□ -2.24
HIF3AQ9Y2N7 ACA64.5-201ENST00000516207 127 ntBASIC1.03□□□□□ -2.24
HIF3AQ9Y2N7 RNA5SP102-201ENST00000516865 106 ntBASIC1.03□□□□□ -2.24
HIF3AQ9Y2N7 MIR4452-201ENST00000583004 71 ntBASIC1.03□□□□□ -2.24
HIF3AQ9Y2N7 MIR7978-201ENST00000636158 59 ntBASIC1.03□□□□□ -2.24
HIF3AQ9Y2N7 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
HIF3AQ9Y2N7 SNORA9.1-201ENST00000362412 131 ntBASIC1.02□□□□□ -2.25
HIF3AQ9Y2N7 SNORD113-4-201ENST00000364802 75 ntBASIC1.02□□□□□ -2.25
HIF3AQ9Y2N7 RNU6-1246P-201ENST00000391064 107 ntBASIC1.02□□□□□ -2.25
HIF3AQ9Y2N7 MIR1285-1-201ENST00000408593 84 ntBASIC1.02□□□□□ -2.25
HIF3AQ9Y2N7 RNU1-29P-201ENST00000606574 126 ntBASIC1.02□□□□□ -2.25
HIF3AQ9Y2N7 AC090617.8-201ENST00000623339 167 ntBASIC1.02□□□□□ -2.25
HIF3AQ9Y2N7 MIR516B1-201ENST00000385211 90 ntBASIC1.01□□□□□ -2.25
HIF3AQ9Y2N7 RNU6-42P-201ENST00000384165 107 ntBASIC1□□□□□ -2.25
HIF3AQ9Y2N7 MIR608-201ENST00000384820 100 ntBASIC1□□□□□ -2.25
HIF3AQ9Y2N7 RNA5SP220-201ENST00000516298 104 ntBASIC1□□□□□ -2.25
HIF3AQ9Y2N7 CYP3A54P-201ENST00000566950 75 ntBASIC1□□□□□ -2.25
HIF3AQ9Y2N7 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
HIF3AQ9Y2N7 Y_RNA.246-201ENST00000364495 108 ntBASIC0.99□□□□□ -2.25
HIF3AQ9Y2N7 Y_RNA.325-201ENST00000365171 122 ntBASIC0.99□□□□□ -2.25
HIF3AQ9Y2N7 MIR140-201ENST00000385282 100 ntBASIC0.99□□□□□ -2.25
HIF3AQ9Y2N7 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.98□□□□□ -2.25
HIF3AQ9Y2N7 RNU6-518P-201ENST00000516056 96 ntBASIC0.98□□□□□ -2.25
HIF3AQ9Y2N7 RNU6-1312P-201ENST00000362425 108 ntBASIC0.97□□□□□ -2.25
HIF3AQ9Y2N7 RNU6-936P-201ENST00000384005 107 ntBASIC0.97□□□□□ -2.25
HIF3AQ9Y2N7 Y_RNA.423-201ENST00000384057 113 ntBASIC0.97□□□□□ -2.25
HIF3AQ9Y2N7 SNORA41B-201ENST00000384785 128 ntBASIC0.97□□□□□ -2.25
HIF3AQ9Y2N7 MIR489-201ENST00000384923 84 ntBASIC0.97□□□□□ -2.25
HIF3AQ9Y2N7 Y_RNA.722-201ENST00000517279 114 ntBASIC0.97□□□□□ -2.25
HIF3AQ9Y2N7 AC211469.2-201ENST00000605461 205 ntBASIC0.97□□□□□ -2.25
HIF3AQ9Y2N7 AC243829.6-201ENST00000612652 106 ntBASIC0.97□□□□□ -2.25
HIF3AQ9Y2N7 SNORD114-22-201ENST00000365423 72 ntBASIC0.96□□□□□ -2.26
HIF3AQ9Y2N7 MIR20A-201ENST00000362279 71 ntBASIC0.95□□□□□ -2.26
HIF3AQ9Y2N7 MIR1255B2-201ENST00000408618 67 ntBASIC0.95□□□□□ -2.26
HIF3AQ9Y2N7 RNU6-1232P-201ENST00000516299 86 ntBASIC0.95□□□□□ -2.26
HIF3AQ9Y2N7 RNU4-54P-201ENST00000516428 129 ntBASIC0.95□□□□□ -2.26
HIF3AQ9Y2N7 RNU7-188P-201ENST00000517063 64 ntBASIC0.95□□□□□ -2.26
HIF3AQ9Y2N7 SNORD114-27-201ENST00000363766 70 ntBASIC0.94□□□□□ -2.26
HIF3AQ9Y2N7 AC244090.1-201ENST00000441884 93 ntBASIC0.94□□□□□ -2.26
HIF3AQ9Y2N7 RNU6-229P-201ENST00000516614 102 ntBASIC0.94□□□□□ -2.26
HIF3AQ9Y2N7 MIR5706-201ENST00000579841 80 ntBASIC0.94□□□□□ -2.26
HIF3AQ9Y2N7 RNU6-110P-201ENST00000384508 104 ntBASIC0.93□□□□□ -2.26
HIF3AQ9Y2N7 SNORD114-21-201ENST00000606412 72 ntBASIC0.93□□□□□ -2.26
HIF3AQ9Y2N7 SNORA2A-201ENST00000383885 135 ntBASIC0.92□□□□□ -2.26
HIF3AQ9Y2N7 AL021921.1-201ENST00000442774 93 ntBASIC0.92□□□□□ -2.26
HIF3AQ9Y2N7 MIR4295-201ENST00000585286 85 ntBASIC0.92□□□□□ -2.26
HIF3AQ9Y2N7 AC103810.9-201ENST00000606688 112 ntBASIC0.92□□□□□ -2.26
HIF3AQ9Y2N7 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.92□□□□□ -2.26
HIF3AQ9Y2N7 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
HIF3AQ9Y2N7 SNORD118-201ENST00000363593 134 ntBASIC0.91□□□□□ -2.26
HIF3AQ9Y2N7 SNORA40.8-201ENST00000411034 126 ntBASIC0.91□□□□□ -2.26
HIF3AQ9Y2N7 AC087343.1-201ENST00000477341 475 ntBASIC0.91□□□□□ -2.26
HIF3AQ9Y2N7 MIR548AD-201ENST00000584780 82 ntBASIC0.91□□□□□ -2.26
HIF3AQ9Y2N7 MIR96-201ENST00000362288 78 ntBASIC0.9□□□□□ -2.27
HIF3AQ9Y2N7 RNU4-38P-201ENST00000364472 129 ntBASIC0.9□□□□□ -2.27
HIF3AQ9Y2N7 SNORD114-29-201ENST00000364819 70 ntBASIC0.9□□□□□ -2.27
HIF3AQ9Y2N7 MIR519A2-201ENST00000384990 87 ntBASIC0.9□□□□□ -2.27
HIF3AQ9Y2N7 SNORD71-201ENST00000411292 86 ntBASIC0.9□□□□□ -2.27
HIF3AQ9Y2N7 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.9□□□□□ -2.27
HIF3AQ9Y2N7 AC243829.3-201ENST00000622177 108 ntBASIC0.9□□□□□ -2.27
HIF3AQ9Y2N7 SNORA49-201ENST00000386157 136 ntBASIC0.89□□□□□ -2.27
HIF3AQ9Y2N7 MIR527-201ENST00000385244 85 ntBASIC0.88□□□□□ -2.27
HIF3AQ9Y2N7 RPS29P1-201ENST00000465274 159 ntBASIC0.88□□□□□ -2.27
HIF3AQ9Y2N7 PSMC1P5-201ENST00000512850 177 ntBASIC0.88□□□□□ -2.27
HIF3AQ9Y2N7 MIR520E-201ENST00000384867 87 ntBASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 MIR501-201ENST00000390204 84 ntBASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 RNU6-337P-201ENST00000391243 106 ntBASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 RNU7-129P-201ENST00000516128 62 ntBASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 AL590095.2-201ENST00000604136 117 ntBASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 U7.6-201ENST00000610841 64 ntBASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 MIR6773-201ENST00000612812 74 ntBASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 MIR6755-201ENST00000619993 66 ntBASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
HIF3AQ9Y2N7 RNU6-1036P-201ENST00000383959 104 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 RNU6-1184P-201ENST00000384588 108 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 MIR518A1-201ENST00000385068 85 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 MIR760-201ENST00000390220 80 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 RNU6-808P-201ENST00000391233 108 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 RNU6-175P-201ENST00000516896 107 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 RNU6-231P-201ENST00000517122 103 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 MIR548AG1-201ENST00000579932 66 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 MIR4677-201ENST00000584153 80 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 MIR6515-201ENST00000619843 57 ntBASIC0.86□□□□□ -2.27
HIF3AQ9Y2N7 SNORD116.2-201ENST00000391251 93 ntBASIC0.85□□□□□ -2.27
HIF3AQ9Y2N7 AC084368.1-201ENST00000620935 65 ntBASIC0.85□□□□□ -2.27
HIF3AQ9Y2N7 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
HIF3AQ9Y2N7 Y_RNA.74-201ENST00000362911 99 ntBASIC0.84□□□□□ -2.27
HIF3AQ9Y2N7 RNU1-93P-201ENST00000364704 169 ntBASIC0.84□□□□□ -2.27
HIF3AQ9Y2N7 RNU6-520P-201ENST00000384717 104 ntBASIC0.84□□□□□ -2.27
HIF3AQ9Y2N7 MIR151B-201ENST00000584249 96 ntBASIC0.84□□□□□ -2.27
HIF3AQ9Y2N7 Y_RNA.282-201ENST00000364793 102 ntBASIC0.83□□□□□ -2.28
HIF3AQ9Y2N7 SNORD116-16-201ENST00000384533 92 ntBASIC0.83□□□□□ -2.28
HIF3AQ9Y2N7 RNU6-1223P-201ENST00000517124 104 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms