Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MIR587-201ENST00000384845 96 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 MIR548I1-201ENST00000408810 149 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 MIR1468-201ENST00000410600 86 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 MTATP6P29-201ENST00000415057 132 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 RNU6-904P-201ENST00000516206 101 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 MIR3671-201ENST00000580455 88 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 RNU6-704P-201ENST00000364162 103 ntBASIC-0.9□□□□□ -2.55
DDX28Q9NUL7 RNA5SP292-201ENST00000390974 118 ntBASIC-0.9□□□□□ -2.55
DDX28Q9NUL7 SNORD75.2-201ENST00000408784 58 ntBASIC-0.9□□□□□ -2.55
DDX28Q9NUL7 RNU6-887P-201ENST00000410660 100 ntBASIC-0.9□□□□□ -2.55
DDX28Q9NUL7 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.9□□□□□ -2.55
DDX28Q9NUL7 SNORA18.5-201ENST00000516616 101 ntBASIC-0.9□□□□□ -2.55
DDX28Q9NUL7 MIR3133-201ENST00000583157 78 ntBASIC-0.9□□□□□ -2.55
DDX28Q9NUL7 RNU6-431P-201ENST00000383874 107 ntBASIC-0.91□□□□□ -2.56
DDX28Q9NUL7 AC021146.9-201ENST00000512503 156 ntBASIC-0.91□□□□□ -2.56
DDX28Q9NUL7 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.91□□□□□ -2.56
DDX28Q9NUL7 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.91□□□□□ -2.56
DDX28Q9NUL7 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.91□□□□□ -2.56
DDX28Q9NUL7 RNU4-32P-201ENST00000363404 141 ntBASIC-0.92□□□□□ -2.56
DDX28Q9NUL7 MIR124-2-201ENST00000385081 109 ntBASIC-0.92□□□□□ -2.56
DDX28Q9NUL7 SNORD64-201ENST00000386683 67 ntBASIC-0.93□□□□□ -2.56
DDX28Q9NUL7 SNORA19.1-201ENST00000410656 129 ntBASIC-0.93□□□□□ -2.56
DDX28Q9NUL7 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.93□□□□□ -2.56
DDX28Q9NUL7 SNORD18.2-201ENST00000459604 70 ntBASIC-0.93□□□□□ -2.56
DDX28Q9NUL7 SNORD83B-201ENST00000386745 93 ntBASIC-0.94□□□□□ -2.56
DDX28Q9NUL7 SCARNA17-201ENST00000516183 144 ntBASIC-0.94□□□□□ -2.56
DDX28Q9NUL7 MIR4464-201ENST00000580818 92 ntBASIC-0.94□□□□□ -2.56
DDX28Q9NUL7 YWHAEP3-201ENST00000582767 121 ntBASIC-0.94□□□□□ -2.56
DDX28Q9NUL7 AC006254.2-201ENST00000603259 279 ntBASIC-0.94□□□□□ -2.56
DDX28Q9NUL7 RNU6-746P-201ENST00000384112 109 ntBASIC-0.95□□□□□ -2.56
DDX28Q9NUL7 MIR1302-5-201ENST00000408164 150 ntBASIC-0.95□□□□□ -2.56
DDX28Q9NUL7 MIR3668-201ENST00000582138 75 ntBASIC-0.95□□□□□ -2.56
DDX28Q9NUL7 U6.96-201ENST00000636425 70 ntBASIC-0.95□□□□□ -2.56
DDX28Q9NUL7 RNU6-208P-201ENST00000362431 107 ntBASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 SNORD116-10-201ENST00000363791 102 ntBASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 SNORD114-17-201ENST00000364699 75 ntBASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 SNORA62.4-201ENST00000365504 151 ntBASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 RNA5SP147-201ENST00000516493 109 ntBASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 uc_338.19-201ENST00000616808 99 ntBASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 MIR4320-201ENST00000636981 65 ntBASIC-0.96□□□□□ -2.56
DDX28Q9NUL7 RNU5F-1-201ENST00000362507 117 ntBASIC-0.97□□□□□ -2.56
DDX28Q9NUL7 RNU6-382P-201ENST00000365181 106 ntBASIC-0.97□□□□□ -2.56
DDX28Q9NUL7 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.97□□□□□ -2.56
DDX28Q9NUL7 RNU6-959P-201ENST00000384671 107 ntBASIC-0.97□□□□□ -2.56
DDX28Q9NUL7 MIR147A-201ENST00000385079 72 ntBASIC-0.97□□□□□ -2.56
DDX28Q9NUL7 MIR4499-201ENST00000584834 69 ntBASIC-0.97□□□□□ -2.56
DDX28Q9NUL7 AL353803.5-201ENST00000599815 141 ntBASIC-0.97□□□□□ -2.56
DDX28Q9NUL7 MIR6738-201ENST00000619620 64 ntBASIC-0.97□□□□□ -2.56
DDX28Q9NUL7 RNU6-774P-201ENST00000363238 107 ntBASIC-0.98□□□□□ -2.57
DDX28Q9NUL7 RNU6-10P-201ENST00000384036 107 ntBASIC-0.98□□□□□ -2.57
DDX28Q9NUL7 MIR203A-201ENST00000384836 110 ntBASIC-0.98□□□□□ -2.57
DDX28Q9NUL7 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.98□□□□□ -2.57
DDX28Q9NUL7 snoU13.17-201ENST00000458802 104 ntBASIC-0.98□□□□□ -2.57
DDX28Q9NUL7 MIR6888-201ENST00000621977 67 ntBASIC-0.98□□□□□ -2.57
DDX28Q9NUL7 MIR382-201ENST00000637119 76 ntBASIC-0.98□□□□□ -2.57
DDX28Q9NUL7 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.99□□□□□ -2.57
DDX28Q9NUL7 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.99□□□□□ -2.57
DDX28Q9NUL7 AC008267.6-201ENST00000441664 139 ntBASIC-0.99□□□□□ -2.57
DDX28Q9NUL7 AC026421.1-201ENST00000519101 163 ntBASIC-0.99□□□□□ -2.57
DDX28Q9NUL7 AC140658.3-201ENST00000567603 271 ntBASIC-0.99□□□□□ -2.57
DDX28Q9NUL7 MIR4324-201ENST00000584846 72 ntBASIC-0.99□□□□□ -2.57
DDX28Q9NUL7 RNU6-1290P-201ENST00000362957 109 ntBASIC-1□□□□□ -2.57
DDX28Q9NUL7 RNU6-824P-201ENST00000363724 104 ntBASIC-1□□□□□ -2.57
DDX28Q9NUL7 SNORA33.1-201ENST00000364957 130 ntBASIC-1□□□□□ -2.57
DDX28Q9NUL7 RNU6-260P-201ENST00000384092 107 ntBASIC-1□□□□□ -2.57
DDX28Q9NUL7 RNU6-537P-201ENST00000517277 103 ntBASIC-1□□□□□ -2.57
DDX28Q9NUL7 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.01□□□□□ -2.57
DDX28Q9NUL7 MIR590-201ENST00000385008 97 ntBASIC-1.01□□□□□ -2.57
DDX28Q9NUL7 AL445584.3-201ENST00000617173 78 ntBASIC-1.01□□□□□ -2.57
DDX28Q9NUL7 MIR4773-1-201ENST00000637203 78 ntBASIC-1.01□□□□□ -2.57
DDX28Q9NUL7 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.02□□□□□ -2.57
DDX28Q9NUL7 SCARNA18B-201ENST00000458806 135 ntBASIC-1.02□□□□□ -2.57
DDX28Q9NUL7 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 MIR601-201ENST00000385256 79 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 MIR1255B2-201ENST00000408618 67 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 RNU7-61P-201ENST00000515897 61 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 MIR4723-201ENST00000585070 81 ntBASIC-1.03□□□□□ -2.57
DDX28Q9NUL7 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.04□□□□□ -2.58
DDX28Q9NUL7 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.04□□□□□ -2.58
DDX28Q9NUL7 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.04□□□□□ -2.58
DDX28Q9NUL7 MIR1236-201ENST00000408340 102 ntBASIC-1.04□□□□□ -2.58
DDX28Q9NUL7 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.04□□□□□ -2.58
DDX28Q9NUL7 MIR3657-201ENST00000584818 117 ntBASIC-1.04□□□□□ -2.58
DDX28Q9NUL7 MIR6509-201ENST00000614603 85 ntBASIC-1.04□□□□□ -2.58
DDX28Q9NUL7 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.04□□□□□ -2.58
DDX28Q9NUL7 RNU6-81P-201ENST00000365608 104 ntBASIC-1.05□□□□□ -2.58
DDX28Q9NUL7 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.05□□□□□ -2.58
DDX28Q9NUL7 RNU6-274P-201ENST00000459566 107 ntBASIC-1.05□□□□□ -2.58
DDX28Q9NUL7 RNA5SP470-201ENST00000516463 106 ntBASIC-1.05□□□□□ -2.58
DDX28Q9NUL7 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.05□□□□□ -2.58
DDX28Q9NUL7 MIR4796-201ENST00000580742 81 ntBASIC-1.05□□□□□ -2.58
DDX28Q9NUL7 MIR198-201ENST00000637333 62 ntBASIC-1.05□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 333.1 ms