Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.28□□□□□ -2.61
CCDC40Q4G0X9 MIR147A-201ENST00000385079 72 ntBASIC-1.28□□□□□ -2.61
CCDC40Q4G0X9 MIR124-2-201ENST00000385081 109 ntBASIC-1.28□□□□□ -2.61
CCDC40Q4G0X9 snoU13.17-201ENST00000458802 104 ntBASIC-1.28□□□□□ -2.61
CCDC40Q4G0X9 RNU6-274P-201ENST00000459566 107 ntBASIC-1.28□□□□□ -2.61
CCDC40Q4G0X9 SCARNA23-201ENST00000516060 130 ntBASIC-1.28□□□□□ -2.61
CCDC40Q4G0X9 RNU6-659P-201ENST00000516454 104 ntBASIC-1.28□□□□□ -2.61
CCDC40Q4G0X9 MIR409-201ENST00000362237 79 ntBASIC-1.29□□□□□ -2.62
CCDC40Q4G0X9 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.3□□□□□ -2.62
CCDC40Q4G0X9 RNU6-887P-201ENST00000410660 100 ntBASIC-1.3□□□□□ -2.62
CCDC40Q4G0X9 AL353803.5-201ENST00000599815 141 ntBASIC-1.3□□□□□ -2.62
CCDC40Q4G0X9 MIR4773-1-201ENST00000637203 78 ntBASIC-1.3□□□□□ -2.62
CCDC40Q4G0X9 SNORA2.1-201ENST00000363089 137 ntBASIC-1.31□□□□□ -2.62
CCDC40Q4G0X9 RNU6-431P-201ENST00000383874 107 ntBASIC-1.31□□□□□ -2.62
CCDC40Q4G0X9 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.31□□□□□ -2.62
CCDC40Q4G0X9 RNU6-346P-201ENST00000516288 111 ntBASIC-1.31□□□□□ -2.62
CCDC40Q4G0X9 AC090617.8-201ENST00000623339 167 ntBASIC-1.31□□□□□ -2.62
CCDC40Q4G0X9 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 RNU4-32P-201ENST00000363404 141 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 RNU6-824P-201ENST00000363724 104 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 RNU6-24P-201ENST00000384440 107 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 RNU6-880P-201ENST00000384526 107 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 SNORD64-201ENST00000386683 67 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 RNU6-904P-201ENST00000516206 101 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 MIR6509-201ENST00000614603 85 ntBASIC-1.32□□□□□ -2.62
CCDC40Q4G0X9 SNORD57-201ENST00000448188 72 ntBASIC-1.33□□□□□ -2.62
CCDC40Q4G0X9 RNU6-255P-201ENST00000516957 105 ntBASIC-1.33□□□□□ -2.62
CCDC40Q4G0X9 RNY1P9-201ENST00000532431 109 ntBASIC-1.33□□□□□ -2.62
CCDC40Q4G0X9 MIR3115-201ENST00000577915 68 ntBASIC-1.33□□□□□ -2.62
CCDC40Q4G0X9 MIR4464-201ENST00000580818 92 ntBASIC-1.33□□□□□ -2.62
CCDC40Q4G0X9 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.35□□□□□ -2.63
CCDC40Q4G0X9 SNORD116-10-201ENST00000363791 102 ntBASIC-1.35□□□□□ -2.63
CCDC40Q4G0X9 SNORD114-17-201ENST00000364699 75 ntBASIC-1.35□□□□□ -2.63
CCDC40Q4G0X9 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.35□□□□□ -2.63
CCDC40Q4G0X9 AL691482.2-201ENST00000457453 84 ntBASIC-1.35□□□□□ -2.63
CCDC40Q4G0X9 MIR3165-201ENST00000579874 75 ntBASIC-1.35□□□□□ -2.63
CCDC40Q4G0X9 MIR3657-201ENST00000584818 117 ntBASIC-1.35□□□□□ -2.63
CCDC40Q4G0X9 SNORA33.1-201ENST00000364957 130 ntBASIC-1.36□□□□□ -2.63
CCDC40Q4G0X9 SNORD116-21-201ENST00000384507 92 ntBASIC-1.36□□□□□ -2.63
CCDC40Q4G0X9 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.36□□□□□ -2.63
CCDC40Q4G0X9 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.36□□□□□ -2.63
CCDC40Q4G0X9 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.36□□□□□ -2.63
CCDC40Q4G0X9 AC026421.1-201ENST00000519101 163 ntBASIC-1.36□□□□□ -2.63
CCDC40Q4G0X9 U6.81-201ENST00000612550 106 ntBASIC-1.36□□□□□ -2.63
CCDC40Q4G0X9 AL445584.3-201ENST00000617173 78 ntBASIC-1.36□□□□□ -2.63
CCDC40Q4G0X9 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 RNA5SP192-201ENST00000364404 120 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 MIR1255B2-201ENST00000408618 67 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 RNA5SP147-201ENST00000516493 109 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 AC140658.3-201ENST00000567603 271 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 MIR6888-201ENST00000621977 67 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 MIR382-201ENST00000637119 76 ntBASIC-1.37□□□□□ -2.63
CCDC40Q4G0X9 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.38□□□□□ -2.63
CCDC40Q4G0X9 MIR203A-201ENST00000384836 110 ntBASIC-1.38□□□□□ -2.63
CCDC40Q4G0X9 RNU6-907P-201ENST00000390924 102 ntBASIC-1.38□□□□□ -2.63
CCDC40Q4G0X9 MIR1236-201ENST00000408340 102 ntBASIC-1.38□□□□□ -2.63
CCDC40Q4G0X9 CYP3A54P-201ENST00000566950 75 ntBASIC-1.38□□□□□ -2.63
CCDC40Q4G0X9 MIR4796-201ENST00000580742 81 ntBASIC-1.38□□□□□ -2.63
CCDC40Q4G0X9 RNU6-924P-201ENST00000362926 108 ntBASIC-1.39□□□□□ -2.63
CCDC40Q4G0X9 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.39□□□□□ -2.63
CCDC40Q4G0X9 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.39□□□□□ -2.63
CCDC40Q4G0X9 SCARNA18B-201ENST00000458806 135 ntBASIC-1.39□□□□□ -2.63
CCDC40Q4G0X9 SNORD116-14-201ENST00000383894 92 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 SNORD116-17-201ENST00000383929 92 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 SNORD116-15-201ENST00000384445 92 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 SNORD116-19-201ENST00000384729 92 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 MIR521-2-201ENST00000384818 87 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 RNA5SP266-201ENST00000410273 108 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 SNORA19.1-201ENST00000410656 129 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 snoU83B.1-201ENST00000517136 88 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 RNU6-537P-201ENST00000517277 103 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.4□□□□□ -2.63
CCDC40Q4G0X9 MIR1302-5-201ENST00000408164 150 ntBASIC-1.41□□□□□ -2.64
CCDC40Q4G0X9 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.41□□□□□ -2.64
CCDC40Q4G0X9 RNU6-794P-201ENST00000517261 64 ntBASIC-1.41□□□□□ -2.64
CCDC40Q4G0X9 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.42□□□□□ -2.64
CCDC40Q4G0X9 RNU6-752P-201ENST00000516376 102 ntBASIC-1.42□□□□□ -2.64
CCDC40Q4G0X9 MIR4306-201ENST00000583390 91 ntBASIC-1.42□□□□□ -2.64
CCDC40Q4G0X9 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.42□□□□□ -2.64
CCDC40Q4G0X9 MIR6739-201ENST00000622461 75 ntBASIC-1.44□□□□□ -2.64
CCDC40Q4G0X9 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.45□□□□□ -2.64
CCDC40Q4G0X9 RNU7-154P-201ENST00000516194 62 ntBASIC-1.45□□□□□ -2.64
CCDC40Q4G0X9 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.45□□□□□ -2.64
CCDC40Q4G0X9 AL450471.1-201ENST00000447509 127 ntBASIC-1.46□□□□□ -2.64
CCDC40Q4G0X9 RNA5SP461-201ENST00000516451 104 ntBASIC-1.46□□□□□ -2.64
CCDC40Q4G0X9 MIR4320-201ENST00000636981 65 ntBASIC-1.46□□□□□ -2.64
CCDC40Q4G0X9 MIR590-201ENST00000385008 97 ntBASIC-1.47□□□□□ -2.64
CCDC40Q4G0X9 RNU7-61P-201ENST00000515897 61 ntBASIC-1.47□□□□□ -2.64
CCDC40Q4G0X9 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.48□□□□□ -2.65
CCDC40Q4G0X9 SNORD115-33-201ENST00000363723 82 ntBASIC-1.48□□□□□ -2.65
CCDC40Q4G0X9 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.48□□□□□ -2.65
CCDC40Q4G0X9 AC090425.1-201ENST00000610007 140 ntBASIC-1.48□□□□□ -2.65
CCDC40Q4G0X9 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.48□□□□□ -2.65
CCDC40Q4G0X9 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.49□□□□□ -2.65
CCDC40Q4G0X9 RNU6-681P-201ENST00000364012 104 ntBASIC-1.49□□□□□ -2.65
CCDC40Q4G0X9 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.49□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 170.6 ms