Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 RNU6-1232P-201ENST00000516299 86 ntBASIC0.47□□□□□ -2.33
PROM1O43490 MIR548AE1-201ENST00000583292 70 ntBASIC0.47□□□□□ -2.33
PROM1O43490 AC243829.6-201ENST00000612652 106 ntBASIC0.47□□□□□ -2.33
PROM1O43490 MIR6509-201ENST00000614603 85 ntBASIC0.47□□□□□ -2.33
PROM1O43490 U7.4-201ENST00000614961 63 ntBASIC0.47□□□□□ -2.33
PROM1O43490 uc_338.10-201ENST00000621872 182 ntBASIC0.47□□□□□ -2.33
PROM1O43490 RNU6-330P-201ENST00000363015 107 ntBASIC0.46□□□□□ -2.34
PROM1O43490 RNU6-1039P-201ENST00000383931 107 ntBASIC0.46□□□□□ -2.34
PROM1O43490 RNA5SP63-201ENST00000391225 112 ntBASIC0.46□□□□□ -2.34
PROM1O43490 MIR889-201ENST00000401280 79 ntBASIC0.46□□□□□ -2.34
PROM1O43490 AC074348.1-201ENST00000426503 132 ntBASIC0.46□□□□□ -2.34
PROM1O43490 MIR103A1-201ENST00000362165 78 ntBASIC0.45□□□□□ -2.34
PROM1O43490 Y_RNA.125-201ENST00000363371 111 ntBASIC0.45□□□□□ -2.34
PROM1O43490 RNU6-863P-201ENST00000515989 104 ntBASIC0.45□□□□□ -2.34
PROM1O43490 AC145423.2-201ENST00000610631 239 ntBASIC0.45□□□□□ -2.34
PROM1O43490 MIR2909-201ENST00000617113 69 ntBASIC0.45□□□□□ -2.34
PROM1O43490 Y_RNA.788-201ENST00000622394 112 ntBASIC0.45□□□□□ -2.34
PROM1O43490 MIRLET7D-201ENST00000362263 87 ntBASIC0.44□□□□□ -2.34
PROM1O43490 VTRNA1-3-201ENST00000365645 89 ntBASIC0.44□□□□□ -2.34
PROM1O43490 MIR652-201ENST00000385278 98 ntBASIC0.44□□□□□ -2.34
PROM1O43490 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
PROM1O43490 RNU6-752P-201ENST00000516376 102 ntBASIC0.44□□□□□ -2.34
PROM1O43490 MIR3675-201ENST00000583661 73 ntBASIC0.44□□□□□ -2.34
PROM1O43490 RNA5SP128-201ENST00000365305 116 ntBASIC0.43□□□□□ -2.34
PROM1O43490 MIR516B1-201ENST00000385211 90 ntBASIC0.43□□□□□ -2.34
PROM1O43490 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
PROM1O43490 RNU6-70P-201ENST00000516438 60 ntBASIC0.43□□□□□ -2.34
PROM1O43490 MIR499B-201ENST00000636498 73 ntBASIC0.43□□□□□ -2.34
PROM1O43490 RNU6-990P-201ENST00000364385 104 ntBASIC0.42□□□□□ -2.34
PROM1O43490 MIR501-201ENST00000390204 84 ntBASIC0.42□□□□□ -2.34
PROM1O43490 AC073261.1-201ENST00000429409 121 ntBASIC0.42□□□□□ -2.34
PROM1O43490 RNU6-848P-201ENST00000515948 107 ntBASIC0.42□□□□□ -2.34
PROM1O43490 RNU6-617P-201ENST00000516147 107 ntBASIC0.42□□□□□ -2.34
PROM1O43490 RNU6-473P-201ENST00000516164 107 ntBASIC0.42□□□□□ -2.34
PROM1O43490 RNU6-1049P-201ENST00000516414 107 ntBASIC0.42□□□□□ -2.34
PROM1O43490 MIR664A-201ENST00000626086 82 ntBASIC0.42□□□□□ -2.34
PROM1O43490 MIR4662A-201ENST00000637499 67 ntBASIC0.42□□□□□ -2.34
PROM1O43490 AC090625.1-201ENST00000357130 210 ntBASIC0.41□□□□□ -2.34
PROM1O43490 MIR329-2-201ENST00000385029 84 ntBASIC0.41□□□□□ -2.34
PROM1O43490 SCARNA17.3-201ENST00000516381 125 ntBASIC0.41□□□□□ -2.34
PROM1O43490 MIR3134-201ENST00000579433 74 ntBASIC0.41□□□□□ -2.34
PROM1O43490 AC023932.2-201ENST00000603176 175 ntBASIC0.41□□□□□ -2.34
PROM1O43490 SNORA9.1-201ENST00000362412 131 ntBASIC0.4□□□□□ -2.35
PROM1O43490 RNU6-260P-201ENST00000384092 107 ntBASIC0.4□□□□□ -2.35
PROM1O43490 snoU13.19-201ENST00000459148 104 ntBASIC0.4□□□□□ -2.35
PROM1O43490 RNA5SP147-201ENST00000516493 109 ntBASIC0.4□□□□□ -2.35
PROM1O43490 MIR4514-201ENST00000581410 57 ntBASIC0.4□□□□□ -2.35
PROM1O43490 MIR4677-201ENST00000584153 80 ntBASIC0.4□□□□□ -2.35
PROM1O43490 AC084368.1-201ENST00000620935 65 ntBASIC0.4□□□□□ -2.35
PROM1O43490 RNU6-776P-201ENST00000364403 104 ntBASIC0.39□□□□□ -2.35
PROM1O43490 RNU6-1022P-201ENST00000365049 104 ntBASIC0.39□□□□□ -2.35
PROM1O43490 MIR3657-201ENST00000584818 117 ntBASIC0.39□□□□□ -2.35
PROM1O43490 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.39□□□□□ -2.35
PROM1O43490 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.39□□□□□ -2.35
PROM1O43490 SNORD45.1-201ENST00000363181 77 ntBASIC0.38□□□□□ -2.35
PROM1O43490 RNU6-815P-201ENST00000384080 113 ntBASIC0.38□□□□□ -2.35
PROM1O43490 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
PROM1O43490 RNU7-188P-201ENST00000517063 64 ntBASIC0.37□□□□□ -2.35
PROM1O43490 MIR548AD-201ENST00000584780 82 ntBASIC0.37□□□□□ -2.35
PROM1O43490 RNA5SP98-201ENST00000363158 137 ntBASIC0.36□□□□□ -2.35
PROM1O43490 SNORD114-29-201ENST00000364819 70 ntBASIC0.36□□□□□ -2.35
PROM1O43490 RNU6-411P-201ENST00000384451 107 ntBASIC0.36□□□□□ -2.35
PROM1O43490 RNU6-30P-201ENST00000384561 107 ntBASIC0.36□□□□□ -2.35
PROM1O43490 Y_RNA.545-201ENST00000384652 105 ntBASIC0.36□□□□□ -2.35
PROM1O43490 MIR154-201ENST00000385243 84 ntBASIC0.36□□□□□ -2.35
PROM1O43490 RNU6-604P-201ENST00000390917 100 ntBASIC0.36□□□□□ -2.35
PROM1O43490 snoU13.13-201ENST00000458842 104 ntBASIC0.36□□□□□ -2.35
PROM1O43490 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.36□□□□□ -2.35
PROM1O43490 MIR20A-201ENST00000362279 71 ntBASIC0.35□□□□□ -2.35
PROM1O43490 SNORA2.1-201ENST00000363089 137 ntBASIC0.35□□□□□ -2.35
PROM1O43490 AC021146.9-201ENST00000512503 156 ntBASIC0.35□□□□□ -2.35
PROM1O43490 MIR582-201ENST00000365731 98 ntBASIC0.34□□□□□ -2.36
PROM1O43490 RNU6-1241P-201ENST00000384536 107 ntBASIC0.34□□□□□ -2.36
PROM1O43490 MIR643-201ENST00000385267 97 ntBASIC0.33□□□□□ -2.36
PROM1O43490 RNU6-127P-201ENST00000390897 107 ntBASIC0.33□□□□□ -2.36
PROM1O43490 RNU6-587P-201ENST00000391282 106 ntBASIC0.33□□□□□ -2.36
PROM1O43490 MIR548E-201ENST00000408287 88 ntBASIC0.33□□□□□ -2.36
PROM1O43490 AC244090.1-201ENST00000441884 93 ntBASIC0.33□□□□□ -2.36
PROM1O43490 AC108740.1-201ENST00000498629 225 ntBASIC0.33□□□□□ -2.36
PROM1O43490 RNA5SP134-201ENST00000516492 96 ntBASIC0.33□□□□□ -2.36
PROM1O43490 AC069113.3-201ENST00000521019 150 ntBASIC0.33□□□□□ -2.36
PROM1O43490 MIR5589-201ENST00000579442 60 ntBASIC0.33□□□□□ -2.36
PROM1O43490 Y_RNA.185-201ENST00000363894 100 ntBASIC0.32□□□□□ -2.36
PROM1O43490 SNORA63.6-201ENST00000364921 119 ntBASIC0.32□□□□□ -2.36
PROM1O43490 RNU6-1327P-201ENST00000365302 105 ntBASIC0.32□□□□□ -2.36
PROM1O43490 Y_RNA.565-201ENST00000384719 101 ntBASIC0.32□□□□□ -2.36
PROM1O43490 RNA5SP299-201ENST00000391203 116 ntBASIC0.32□□□□□ -2.36
PROM1O43490 Z95118.1-201ENST00000421372 247 ntBASIC0.32□□□□□ -2.36
PROM1O43490 SCARNA11.2-201ENST00000517183 154 ntBASIC0.32□□□□□ -2.36
PROM1O43490 MIR3925-201ENST00000584674 77 ntBASIC0.32□□□□□ -2.36
PROM1O43490 MIR6759-201ENST00000638110 65 ntBASIC0.32□□□□□ -2.36
PROM1O43490 RNU6-1296P-201ENST00000383879 107 ntBASIC0.31□□□□□ -2.36
PROM1O43490 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.31□□□□□ -2.36
PROM1O43490 MIR4636-201ENST00000582271 80 ntBASIC0.31□□□□□ -2.36
PROM1O43490 MIR8053-201ENST00000613344 75 ntBASIC0.31□□□□□ -2.36
PROM1O43490 SNORD45A-201ENST00000384512 84 ntBASIC0.3□□□□□ -2.36
PROM1O43490 SNORA75.1-201ENST00000391130 148 ntBASIC0.3□□□□□ -2.36
PROM1O43490 RNU6-1015P-201ENST00000517121 99 ntBASIC0.3□□□□□ -2.36
PROM1O43490 SNORA40.17-201ENST00000517256 115 ntBASIC0.3□□□□□ -2.36
PROM1O43490 RNU6-687P-201ENST00000516443 89 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 245.3 ms