Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR3657-201ENST00000584818 117 ntBASIC1.43□□□□□ -2.18
LIMD1Q9UGP4 SNORA2.1-201ENST00000363089 137 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 SNORD114-27-201ENST00000363766 70 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 RNU1-93P-201ENST00000364704 169 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 RNA5SP94-201ENST00000516917 108 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 AC005520.4-201ENST00000604337 90 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 SNORD114-26-201ENST00000363543 72 ntBASIC1.41□□□□□ -2.18
LIMD1Q9UGP4 RNA5SP484-201ENST00000458857 111 ntBASIC1.41□□□□□ -2.18
LIMD1Q9UGP4 RPS29P1-201ENST00000465274 159 ntBASIC1.41□□□□□ -2.18
LIMD1Q9UGP4 AL353765.1-201ENST00000605514 183 ntBASIC1.41□□□□□ -2.18
LIMD1Q9UGP4 MIR203A-201ENST00000384836 110 ntBASIC1.4□□□□□ -2.19
LIMD1Q9UGP4 MIR1265-201ENST00000408444 86 ntBASIC1.4□□□□□ -2.19
LIMD1Q9UGP4 RNA5SP325-201ENST00000363756 130 ntBASIC1.39□□□□□ -2.19
LIMD1Q9UGP4 Y_RNA.205-201ENST00000364128 113 ntBASIC1.39□□□□□ -2.19
LIMD1Q9UGP4 Y_RNA.250-201ENST00000364542 110 ntBASIC1.39□□□□□ -2.19
LIMD1Q9UGP4 RNA5SP222-201ENST00000411039 105 ntBASIC1.39□□□□□ -2.19
LIMD1Q9UGP4 SNORA36.1-201ENST00000363424 132 ntBASIC1.38□□□□□ -2.19
LIMD1Q9UGP4 MIR6779-201ENST00000617283 64 ntBASIC1.38□□□□□ -2.19
LIMD1Q9UGP4 SNORD116-24-201ENST00000384549 92 ntBASIC1.37□□□□□ -2.19
LIMD1Q9UGP4 RNU6-955P-201ENST00000410497 104 ntBASIC1.37□□□□□ -2.19
LIMD1Q9UGP4 RNA5SP61-201ENST00000516453 100 ntBASIC1.37□□□□□ -2.19
LIMD1Q9UGP4 PVT1_3.1-201ENST00000620853 95 ntBASIC1.37□□□□□ -2.19
LIMD1Q9UGP4 RNU6-668P-201ENST00000364180 107 ntBASIC1.36□□□□□ -2.19
LIMD1Q9UGP4 AC006210.1-201ENST00000424882 111 ntBASIC1.36□□□□□ -2.19
LIMD1Q9UGP4 RNU5B-6P-201ENST00000516765 68 ntBASIC1.36□□□□□ -2.19
LIMD1Q9UGP4 MIR7974-201ENST00000615835 79 ntBASIC1.36□□□□□ -2.19
LIMD1Q9UGP4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
LIMD1Q9UGP4 SNORA40.6-201ENST00000391153 128 ntBASIC1.35□□□□□ -2.19
LIMD1Q9UGP4 MIR3660-201ENST00000584845 100 ntBASIC1.35□□□□□ -2.19
LIMD1Q9UGP4 AC103706.3-201ENST00000636297 85 ntBASIC1.35□□□□□ -2.19
LIMD1Q9UGP4 Y_RNA.407-201ENST00000383986 113 ntBASIC1.34□□□□□ -2.19
LIMD1Q9UGP4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.34□□□□□ -2.19
LIMD1Q9UGP4 MIR7107-201ENST00000611489 80 ntBASIC1.34□□□□□ -2.19
LIMD1Q9UGP4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.2
LIMD1Q9UGP4 MIR548J-201ENST00000408833 112 ntBASIC1.33□□□□□ -2.2
LIMD1Q9UGP4 RNU6-982P-201ENST00000516216 102 ntBASIC1.33□□□□□ -2.2
LIMD1Q9UGP4 AC018659.1-201ENST00000551083 169 ntBASIC1.33□□□□□ -2.2
LIMD1Q9UGP4 MIR598-201ENST00000384868 97 ntBASIC1.32□□□□□ -2.2
LIMD1Q9UGP4 SNORD110-201ENST00000408189 75 ntBASIC1.32□□□□□ -2.2
LIMD1Q9UGP4 MIR6788-201ENST00000618842 66 ntBASIC1.32□□□□□ -2.2
LIMD1Q9UGP4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.32□□□□□ -2.2
LIMD1Q9UGP4 RNU6-645P-201ENST00000364649 106 ntBASIC1.31□□□□□ -2.2
LIMD1Q9UGP4 MIR151B-201ENST00000584249 96 ntBASIC1.31□□□□□ -2.2
LIMD1Q9UGP4 MIR6739-201ENST00000622461 75 ntBASIC1.31□□□□□ -2.2
LIMD1Q9UGP4 MIR150-201ENST00000385048 84 ntBASIC1.3□□□□□ -2.2
LIMD1Q9UGP4 MIR4511-201ENST00000582784 87 ntBASIC1.3□□□□□ -2.2
LIMD1Q9UGP4 MIR6767-201ENST00000637302 66 ntBASIC1.3□□□□□ -2.2
LIMD1Q9UGP4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.29□□□□□ -2.2
LIMD1Q9UGP4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 RNU6-990P-201ENST00000364385 104 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 SNORA36.2-201ENST00000384004 127 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 RNU6-1162P-201ENST00000384443 104 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 MIR140-201ENST00000385282 100 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 MIR758-201ENST00000390227 88 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 SCARNA17.3-201ENST00000516381 125 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 MIR5706-201ENST00000579841 80 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 MIR608-201ENST00000384820 100 ntBASIC1.27□□□□□ -2.21
LIMD1Q9UGP4 MIR4295-201ENST00000585286 85 ntBASIC1.27□□□□□ -2.21
LIMD1Q9UGP4 RNA5SP436-201ENST00000516020 115 ntBASIC1.26□□□□□ -2.21
LIMD1Q9UGP4 RNA5SP147-201ENST00000516493 109 ntBASIC1.26□□□□□ -2.21
LIMD1Q9UGP4 AC087343.1-201ENST00000477341 475 ntBASIC1.25□□□□□ -2.21
LIMD1Q9UGP4 AC068338.1-201ENST00000565567 176 ntBASIC1.25□□□□□ -2.21
LIMD1Q9UGP4 AC092634.7-201ENST00000621022 103 ntBASIC1.25□□□□□ -2.21
LIMD1Q9UGP4 RNU6-542P-201ENST00000516405 103 ntBASIC1.24□□□□□ -2.21
LIMD1Q9UGP4 SNORA15B-2-201ENST00000384058 135 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 SNORA15B-1-201ENST00000384334 135 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 RNU6-110P-201ENST00000384508 104 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 SNORA40.17-201ENST00000517256 115 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 U7.6-201ENST00000610841 64 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 RNA5SP215-201ENST00000363440 122 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 RNA5SP517-201ENST00000364724 117 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 RNU6-1187P-201ENST00000364771 110 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 Y_RNA.375-201ENST00000365625 101 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 MIR521-2-201ENST00000384818 87 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 MIR4473-201ENST00000583731 91 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 uc_338.10-201ENST00000621872 182 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 MIR652-201ENST00000385278 98 ntBASIC1.21□□□□□ -2.22
LIMD1Q9UGP4 SNORD71-201ENST00000411292 86 ntBASIC1.21□□□□□ -2.22
LIMD1Q9UGP4 AC021146.9-201ENST00000512503 156 ntBASIC1.21□□□□□ -2.22
LIMD1Q9UGP4 SNORA40.8-201ENST00000411034 126 ntBASIC1.2□□□□□ -2.22
LIMD1Q9UGP4 OR2A41P-201ENST00000473586 105 ntBASIC1.2□□□□□ -2.22
LIMD1Q9UGP4 RNU6-656P-201ENST00000516785 107 ntBASIC1.2□□□□□ -2.22
LIMD1Q9UGP4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
LIMD1Q9UGP4 SNORA63.6-201ENST00000364921 119 ntBASIC1.19□□□□□ -2.22
LIMD1Q9UGP4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.19□□□□□ -2.22
LIMD1Q9UGP4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.18□□□□□ -2.22
LIMD1Q9UGP4 SNORA70.25-201ENST00000612741 95 ntBASIC1.18□□□□□ -2.22
LIMD1Q9UGP4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.18□□□□□ -2.22
LIMD1Q9UGP4 SNORD118-201ENST00000363593 134 ntBASIC1.17□□□□□ -2.22
LIMD1Q9UGP4 RNU6-302P-201ENST00000365249 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-848P-201ENST00000515948 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-617P-201ENST00000516147 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-473P-201ENST00000516164 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-1049P-201ENST00000516414 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 MIR548AE1-201ENST00000583292 70 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-669P-201ENST00000365575 107 ntBASIC1.15□□□□□ -2.23
LIMD1Q9UGP4 RNY1P8-201ENST00000383970 114 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 312.1 ms