Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL691482.2-201ENST00000457453 84 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 AC002350.1-201ENST00000490759 375 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 RNU7-40P-201ENST00000516397 64 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 RNU6-539P-201ENST00000516665 103 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 RNU6-1057P-201ENST00000517162 102 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 MIR3920-201ENST00000581751 86 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 RNU6-824P-201ENST00000363724 104 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 Y_RNA.386-201ENST00000383913 105 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 SNORA25-201ENST00000384384 134 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 RNU6-663P-201ENST00000391105 106 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 RNA5SP299-201ENST00000391203 116 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.56□□□□□ -2.32
COL4A4P53420 RNU7-161P-201ENST00000517289 62 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 MIR6509-201ENST00000614603 85 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 SNORD45.1-201ENST00000363181 77 ntBASIC0.55□□□□□ -2.32
COL4A4P53420 SNORD113.1-201ENST00000363280 73 ntBASIC0.55□□□□□ -2.32
COL4A4P53420 MIR19B1-201ENST00000384829 87 ntBASIC0.55□□□□□ -2.32
COL4A4P53420 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
COL4A4P53420 AC067940.1-201ENST00000458411 300 ntBASIC0.55□□□□□ -2.32
COL4A4P53420 AC125388.1-201ENST00000459631 156 ntBASIC0.55□□□□□ -2.32
COL4A4P53420 RNU6-758P-201ENST00000516292 89 ntBASIC0.55□□□□□ -2.32
COL4A4P53420 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.55□□□□□ -2.32
COL4A4P53420 RNU6-330P-201ENST00000363015 107 ntBASIC0.54□□□□□ -2.32
COL4A4P53420 RNU6-726P-201ENST00000364680 107 ntBASIC0.54□□□□□ -2.32
COL4A4P53420 RNA5SP117-201ENST00000365294 118 ntBASIC0.54□□□□□ -2.32
COL4A4P53420 Y_RNA.340-201ENST00000365330 92 ntBASIC0.54□□□□□ -2.32
COL4A4P53420 RNU6-1126P-201ENST00000384002 107 ntBASIC0.54□□□□□ -2.32
COL4A4P53420 AC244669.1-204ENST00000621564 178 ntBASIC0.54□□□□□ -2.32
COL4A4P53420 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.54□□□□□ -2.32
COL4A4P53420 RNU6-260P-201ENST00000384092 107 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 MIR451A-201ENST00000385059 72 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
COL4A4P53420 SNORD30.1-201ENST00000391309 70 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 RNU6-994P-201ENST00000410507 111 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 AC002429.1-201ENST00000437672 148 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 AC093423.1-201ENST00000440817 142 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 MIR2113-201ENST00000459007 91 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 RNU6-274P-201ENST00000459566 107 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 FGF7P7-201ENST00000514120 227 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 AC025627.3-201ENST00000582078 182 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 MIR6739-201ENST00000622461 75 ntBASIC0.53□□□□□ -2.32
COL4A4P53420 SNORD115-31-201ENST00000365318 82 ntBASIC0.53□□□□□ -2.33
COL4A4P53420 MIR519E-201ENST00000385075 84 ntBASIC0.53□□□□□ -2.33
COL4A4P53420 SNORD105-201ENST00000386910 85 ntBASIC0.53□□□□□ -2.33
COL4A4P53420 MIR1827-201ENST00000408549 66 ntBASIC0.53□□□□□ -2.33
COL4A4P53420 RNU6-1110P-201ENST00000516462 101 ntBASIC0.53□□□□□ -2.33
COL4A4P53420 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.53□□□□□ -2.33
COL4A4P53420 AC005520.4-201ENST00000604337 90 ntBASIC0.53□□□□□ -2.33
COL4A4P53420 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.53□□□□□ -2.33
COL4A4P53420 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.53□□□□□ -2.33
COL4A4P53420 RNU6-649P-201ENST00000384463 107 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 SNORD28-201ENST00000384706 75 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 MIR203A-201ENST00000384836 110 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 MIR100-201ENST00000385259 80 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 MIR644A-201ENST00000385262 94 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 SNORD12-201ENST00000391002 90 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 RNU6-630P-201ENST00000391258 106 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 RNU6-935P-201ENST00000410371 100 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 FABP5P4-201ENST00000437203 171 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 MIR548AG2-201ENST00000581228 64 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 MIR4484-201ENST00000582855 83 ntBASIC0.52□□□□□ -2.33
COL4A4P53420 SNORD115-44-201ENST00000365391 82 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 RNU6-30P-201ENST00000384561 107 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 MIR200A-201ENST00000384875 90 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 SNORD41.1-201ENST00000391000 69 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 RNU6-1265P-201ENST00000516342 103 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 RNU6-542P-201ENST00000516405 103 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 RNU7-13P-201ENST00000516413 62 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 MIR548O2-201ENST00000616090 70 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 AL162376.1-201ENST00000624117 175 ntBASIC0.51□□□□□ -2.33
COL4A4P53420 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.51□□□□□ -2.33
COL4A4P53420 SNORD115-24-201ENST00000363528 82 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 RNA5SP403-201ENST00000363598 108 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 RNU1-124P-201ENST00000363861 145 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 SNORD114-4-201ENST00000363962 75 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 RNU6-382P-201ENST00000365181 106 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 RNU6-154P-201ENST00000384306 106 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 MIR942-201ENST00000401111 86 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 SNORD99-201ENST00000408612 74 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 SNORD75.2-201ENST00000408784 58 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 RNU7-74P-201ENST00000459104 62 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 RNU6-135P-201ENST00000516769 101 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 MIR3678-201ENST00000578455 94 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 MIR6718-201ENST00000616153 80 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 MIR5087-201ENST00000635826 76 ntBASIC0.5□□□□□ -2.33
COL4A4P53420 RNA5SP215-201ENST00000363440 122 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 RNA5SP368-201ENST00000364298 116 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 RNU6V-201ENST00000384105 107 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 SNORD45A-201ENST00000384512 84 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 MT-TY-201ENST00000387409 66 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
COL4A4P53420 AC110620.1-201ENST00000416042 228 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 RNA5SP255-201ENST00000516370 107 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 MIR4639-201ENST00000584938 69 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.49□□□□□ -2.33
COL4A4P53420 RNU6-800P-201ENST00000384473 103 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 RNA5SP266-201ENST00000410273 108 ntBASIC0.49□□□□□ -2.33
COL4A4P53420 AC114737.2-201ENST00000421583 173 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 177.3 ms