Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MIR517C-201ENST00000385103 95 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 SNORD116.2-201ENST00000391251 93 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 SNORD79.1-201ENST00000516069 84 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 RNA5SP102-201ENST00000516865 106 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.59□□□□□ -2.15
COL8A1P27658 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL8A1P27658 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
COL8A1P27658 SNORA25.8-201ENST00000364831 128 ntBASIC1.58□□□□□ -2.16
COL8A1P27658 RNU6-910P-201ENST00000390844 107 ntBASIC1.58□□□□□ -2.16
COL8A1P27658 MIR7110-201ENST00000612638 86 ntBASIC1.58□□□□□ -2.16
COL8A1P27658 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL8A1P27658 SNORD116-16-201ENST00000384533 92 ntBASIC1.57□□□□□ -2.16
COL8A1P27658 SCARNA17.3-201ENST00000516381 125 ntBASIC1.57□□□□□ -2.16
COL8A1P27658 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.57□□□□□ -2.16
COL8A1P27658 MIR502-201ENST00000606349 86 ntBASIC1.57□□□□□ -2.16
COL8A1P27658 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.57□□□□□ -2.16
COL8A1P27658 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
COL8A1P27658 SNORA9.1-201ENST00000362412 131 ntBASIC1.56□□□□□ -2.16
COL8A1P27658 RNU6-269P-201ENST00000391077 97 ntBASIC1.56□□□□□ -2.16
COL8A1P27658 RNA5SP47-201ENST00000517230 109 ntBASIC1.56□□□□□ -2.16
COL8A1P27658 MIR6515-201ENST00000619843 57 ntBASIC1.56□□□□□ -2.16
COL8A1P27658 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.55□□□□□ -2.16
COL8A1P27658 Y_RNA.74-201ENST00000362911 99 ntBASIC1.55□□□□□ -2.16
COL8A1P27658 RNU6-838P-201ENST00000363399 108 ntBASIC1.55□□□□□ -2.16
COL8A1P27658 RNU1-42P-201ENST00000364033 160 ntBASIC1.55□□□□□ -2.16
COL8A1P27658 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
COL8A1P27658 RNU1-78P-201ENST00000391248 165 ntBASIC1.55□□□□□ -2.16
COL8A1P27658 HMGN2P19-201ENST00000425149 265 ntBASIC1.55□□□□□ -2.16
COL8A1P27658 MIR3198-2-201ENST00000577868 80 ntBASIC1.55□□□□□ -2.16
COL8A1P27658 AC012493.3-201ENST00000604494 112 ntBASIC1.55□□□□□ -2.16
COL8A1P27658 SNORD18A-201ENST00000363753 72 ntBASIC1.54□□□□□ -2.16
COL8A1P27658 RNU6-716P-201ENST00000365621 103 ntBASIC1.54□□□□□ -2.16
COL8A1P27658 SNORA40B-201ENST00000385573 128 ntBASIC1.54□□□□□ -2.16
COL8A1P27658 RNU6-1246P-201ENST00000391064 107 ntBASIC1.54□□□□□ -2.16
COL8A1P27658 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.54□□□□□ -2.16
COL8A1P27658 AL021921.1-201ENST00000442774 93 ntBASIC1.54□□□□□ -2.16
COL8A1P27658 RNA5SP484-201ENST00000458857 111 ntBASIC1.54□□□□□ -2.16
COL8A1P27658 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL8A1P27658 Y_RNA.407-201ENST00000383986 113 ntBASIC1.53□□□□□ -2.16
COL8A1P27658 MIR545-201ENST00000385085 106 ntBASIC1.53□□□□□ -2.16
COL8A1P27658 MIR4422-201ENST00000581938 83 ntBASIC1.53□□□□□ -2.16
COL8A1P27658 MIR652-201ENST00000385278 98 ntBASIC1.52□□□□□ -2.17
COL8A1P27658 CYP3A54P-201ENST00000566950 75 ntBASIC1.52□□□□□ -2.17
COL8A1P27658 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.52□□□□□ -2.17
COL8A1P27658 PVT1_3.1-201ENST00000620853 95 ntBASIC1.52□□□□□ -2.17
COL8A1P27658 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.52□□□□□ -2.17
COL8A1P27658 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
COL8A1P27658 SNORD12-201ENST00000391002 90 ntBASIC1.51□□□□□ -2.17
COL8A1P27658 AC022709.1-201ENST00000615967 87 ntBASIC1.51□□□□□ -2.17
COL8A1P27658 AL162376.1-201ENST00000624117 175 ntBASIC1.51□□□□□ -2.17
COL8A1P27658 MIR548E-201ENST00000408287 88 ntBASIC1.5□□□□□ -2.17
COL8A1P27658 RNA5SP489-201ENST00000410986 109 ntBASIC1.5□□□□□ -2.17
COL8A1P27658 SCARNA16.5-201ENST00000517114 183 ntBASIC1.5□□□□□ -2.17
COL8A1P27658 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
COL8A1P27658 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.49□□□□□ -2.17
COL8A1P27658 Y_RNA.282-201ENST00000364793 102 ntBASIC1.49□□□□□ -2.17
COL8A1P27658 MIR582-201ENST00000365731 98 ntBASIC1.49□□□□□ -2.17
COL8A1P27658 MIR527-201ENST00000385244 85 ntBASIC1.49□□□□□ -2.17
COL8A1P27658 RNU1-92P-201ENST00000517017 135 ntBASIC1.49□□□□□ -2.17
COL8A1P27658 SNORA70.22-201ENST00000517160 124 ntBASIC1.49□□□□□ -2.17
COL8A1P27658 SNORD53B-201ENST00000577887 78 ntBASIC1.49□□□□□ -2.17
COL8A1P27658 MIR96-201ENST00000362288 78 ntBASIC1.48□□□□□ -2.17
COL8A1P27658 RNU6-518P-201ENST00000516056 96 ntBASIC1.48□□□□□ -2.17
COL8A1P27658 U6.96-201ENST00000636425 70 ntBASIC1.48□□□□□ -2.17
COL8A1P27658 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
COL8A1P27658 RNU6-810P-201ENST00000364001 107 ntBASIC1.47□□□□□ -2.17
COL8A1P27658 RNU6-1110P-201ENST00000516462 101 ntBASIC1.47□□□□□ -2.17
COL8A1P27658 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.47□□□□□ -2.17
COL8A1P27658 MIR3122-201ENST00000577243 73 ntBASIC1.47□□□□□ -2.17
COL8A1P27658 MIR4285-201ENST00000581001 85 ntBASIC1.47□□□□□ -2.17
COL8A1P27658 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.47□□□□□ -2.17
COL8A1P27658 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
COL8A1P27658 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
COL8A1P27658 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.46□□□□□ -2.18
COL8A1P27658 RNU6-246P-201ENST00000384702 107 ntBASIC1.46□□□□□ -2.18
COL8A1P27658 MIR3678-201ENST00000578455 94 ntBASIC1.46□□□□□ -2.18
COL8A1P27658 RNU6-247P-201ENST00000362636 107 ntBASIC1.45□□□□□ -2.18
COL8A1P27658 SNORA16.1-201ENST00000364597 132 ntBASIC1.45□□□□□ -2.18
COL8A1P27658 SNORD105-201ENST00000386910 85 ntBASIC1.45□□□□□ -2.18
COL8A1P27658 U7.7-201ENST00000459276 60 ntBASIC1.45□□□□□ -2.18
COL8A1P27658 MIR548AE1-201ENST00000583292 70 ntBASIC1.45□□□□□ -2.18
COL8A1P27658 MIR516B1-201ENST00000385211 90 ntBASIC1.44□□□□□ -2.18
COL8A1P27658 AC008834.1-201ENST00000511612 175 ntBASIC1.44□□□□□ -2.18
COL8A1P27658 RNU6-419P-201ENST00000517030 63 ntBASIC1.44□□□□□ -2.18
COL8A1P27658 MIR4421-201ENST00000578133 69 ntBASIC1.44□□□□□ -2.18
COL8A1P27658 MIR6828-201ENST00000636181 60 ntBASIC1.44□□□□□ -2.18
COL8A1P27658 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
COL8A1P27658 MIR519A2-201ENST00000384990 87 ntBASIC1.43□□□□□ -2.18
COL8A1P27658 SNORD89-201ENST00000390981 114 ntBASIC1.43□□□□□ -2.18
COL8A1P27658 RNU6-172P-201ENST00000411000 93 ntBASIC1.43□□□□□ -2.18
COL8A1P27658 AC002429.1-201ENST00000437672 148 ntBASIC1.43□□□□□ -2.18
COL8A1P27658 AC243829.3-201ENST00000622177 108 ntBASIC1.43□□□□□ -2.18
COL8A1P27658 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.42□□□□□ -2.18
COL8A1P27658 SNORD1B-201ENST00000363091 84 ntBASIC1.42□□□□□ -2.18
COL8A1P27658 SNORA67.6-201ENST00000391093 99 ntBASIC1.42□□□□□ -2.18
COL8A1P27658 AC006210.1-201ENST00000424882 111 ntBASIC1.42□□□□□ -2.18
COL8A1P27658 MIR4419B-201ENST00000577260 68 ntBASIC1.42□□□□□ -2.18
COL8A1P27658 MIR4255-201ENST00000579351 72 ntBASIC1.42□□□□□ -2.18
COL8A1P27658 MIR4473-201ENST00000583731 91 ntBASIC1.42□□□□□ -2.18
COL8A1P27658 AC243829.6-201ENST00000612652 106 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 277.7 ms