Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SNORD38.3-201ENST00000516599 73 ntBASIC-0.73□□□□□ -2.53
SIX3O95343 AC090425.1-201ENST00000610007 140 ntBASIC-0.73□□□□□ -2.53
SIX3O95343 MIR577-201ENST00000385196 96 ntBASIC-0.74□□□□□ -2.53
SIX3O95343 snosnR66.1-201ENST00000391095 99 ntBASIC-0.74□□□□□ -2.53
SIX3O95343 FGF7P7-201ENST00000514120 227 ntBASIC-0.74□□□□□ -2.53
SIX3O95343 MIR548O2-201ENST00000616090 70 ntBASIC-0.74□□□□□ -2.53
SIX3O95343 SNORD114-4-201ENST00000363962 75 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 RNU6-54P-201ENST00000365563 107 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 RNU6-900P-201ENST00000384498 102 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 AL078595.1-201ENST00000404458 226 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 AC025521.1-201ENST00000621624 286 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 RNA5SP93-201ENST00000362525 114 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 SNORD115-25-201ENST00000362619 82 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 RNU6-832P-201ENST00000363319 107 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 SNORD56B-201ENST00000384713 71 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 SNORD2-201ENST00000459163 69 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 RNU7-200P-201ENST00000516105 62 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 RNY3P2-201ENST00000362918 102 ntBASIC-0.77□□□□□ -2.53
SIX3O95343 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.77□□□□□ -2.53
SIX3O95343 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 Y_RNA.53-201ENST00000362765 102 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 SNORD45B-201ENST00000364617 72 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 U3.27-201ENST00000391237 200 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.78□□□□□ -2.53
SIX3O95343 AC097510.1-201ENST00000510945 133 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 AC068339.1-201ENST00000526965 141 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 MIR4679-2-201ENST00000578358 77 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 MIR4280-201ENST00000582178 76 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 AL035470.1-201ENST00000622571 220 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 RNU6-257P-201ENST00000410238 98 ntBASIC-0.79□□□□□ -2.54
SIX3O95343 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.79□□□□□ -2.54
SIX3O95343 SNORD54-201ENST00000459159 67 ntBASIC-0.8□□□□□ -2.54
SIX3O95343 MIR582-201ENST00000365731 98 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 Y_RNA.464-201ENST00000384282 110 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 MIR548A1-201ENST00000385041 97 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 RNU7-107P-201ENST00000459121 61 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 MIR5704-201ENST00000584029 77 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 MIR548A3-201ENST00000385297 97 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 SNORA49-201ENST00000386157 136 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 MIR548U-201ENST00000390728 81 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 AC021146.6-201ENST00000514659 117 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 RNU6-971P-201ENST00000516920 106 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 AL513043.2-201ENST00000573941 143 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 MIR4439-201ENST00000583746 80 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.83□□□□□ -2.54
SIX3O95343 SNORD50.2-201ENST00000365465 70 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.84□□□□□ -2.54
SIX3O95343 SNORD42B-201ENST00000458893 67 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 RNU6-75P-201ENST00000515944 104 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 RNU6-346P-201ENST00000516288 111 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 snoR1.1-201ENST00000628177 80 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.85□□□□□ -2.55
SIX3O95343 MIR548E-201ENST00000408287 88 ntBASIC-0.85□□□□□ -2.55
SIX3O95343 MIR5009-201ENST00000578736 100 ntBASIC-0.85□□□□□ -2.55
SIX3O95343 RNU4-36P-201ENST00000364294 144 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.86□□□□□ -2.55
SIX3O95343 RNU7-55P-201ENST00000459426 62 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 SNORA40.17-201ENST00000517256 115 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 AC145423.2-201ENST00000610631 239 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 MIR6851-201ENST00000617060 67 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 U6.95-201ENST00000636931 70 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 RNU6-813P-201ENST00000384691 107 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 RNU6-476P-201ENST00000384726 107 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 RNU6-907P-201ENST00000390924 102 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 RNU6-274P-201ENST00000459566 107 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 MIR3140-201ENST00000583685 90 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 AC103810.7-201ENST00000607821 91 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 AC091912.2-201ENST00000624798 167 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR518B-201ENST00000385127 83 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR3179-1-201ENST00000578940 84 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR3179-2-201ENST00000579107 84 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR3179-3-201ENST00000579566 84 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR3179-4-201ENST00000617599 84 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 RNU6-80P-201ENST00000384195 107 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 RNU6-644P-201ENST00000391155 98 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 SNORD33.1-201ENST00000516213 88 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 SNORD22.1-201ENST00000516331 125 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 MIR8068-201ENST00000618032 68 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 MIR3914-2-201ENST00000637339 95 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-132P-201ENST00000383863 107 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 MIR517B-201ENST00000385102 67 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-721P-201ENST00000410155 105 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-519P-201ENST00000410590 108 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-881P-201ENST00000516813 102 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-706P-201ENST00000517229 104 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-502P-201ENST00000362419 108 ntBASIC-0.91□□□□□ -2.56
SIX3O95343 RNU6-973P-201ENST00000364690 107 ntBASIC-0.91□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 168.7 ms