Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 MIR4255-201ENST00000579351 72 ntBASIC2.56□□□□□ -2
CCDC61Q9Y6R9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC2.56□□□□□ -2
CCDC61Q9Y6R9 AC084768.2-201ENST00000622736 221 ntBASIC2.56□□□□□ -2
CCDC61Q9Y6R9 Y_RNA.363-201ENST00000365529 113 ntBASIC2.55□□□□□ -2
CCDC61Q9Y6R9 MIR934-201ENST00000401241 83 ntBASIC2.55□□□□□ -2
CCDC61Q9Y6R9 MIR548F3-201ENST00000408509 87 ntBASIC2.55□□□□□ -2
CCDC61Q9Y6R9 RNU5B-6P-201ENST00000516765 68 ntBASIC2.55□□□□□ -2
CCDC61Q9Y6R9 AC244669.1-204ENST00000621564 178 ntBASIC2.55□□□□□ -2
CCDC61Q9Y6R9 SNORD13-201ENST00000459299 104 ntBASIC2.54□□□□□ -2
CCDC61Q9Y6R9 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.54□□□□□ -2
CCDC61Q9Y6R9 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC61Q9Y6R9 Y_RNA.325-201ENST00000365171 122 ntBASIC2.53□□□□□ -2
CCDC61Q9Y6R9 MIR644A-201ENST00000385262 94 ntBASIC2.53□□□□□ -2
CCDC61Q9Y6R9 Y_RNA.633-201ENST00000459107 95 ntBASIC2.53□□□□□ -2
CCDC61Q9Y6R9 SNORA25.15-201ENST00000516487 89 ntBASIC2.53□□□□□ -2
CCDC61Q9Y6R9 AL049779.4-201ENST00000604500 156 ntBASIC2.53□□□□□ -2
CCDC61Q9Y6R9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC61Q9Y6R9 SNORD28-201ENST00000384706 75 ntBASIC2.52□□□□□ -2.01
CCDC61Q9Y6R9 MIR17-201ENST00000385012 84 ntBASIC2.52□□□□□ -2.01
CCDC61Q9Y6R9 RNA5SP82-201ENST00000516707 92 ntBASIC2.52□□□□□ -2.01
CCDC61Q9Y6R9 MIR548X-201ENST00000580069 75 ntBASIC2.52□□□□□ -2.01
CCDC61Q9Y6R9 MIR7110-201ENST00000612638 86 ntBASIC2.52□□□□□ -2.01
CCDC61Q9Y6R9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC61Q9Y6R9 SNORA25.8-201ENST00000364831 128 ntBASIC2.51□□□□□ -2.01
CCDC61Q9Y6R9 RMST_2.1-201ENST00000617263 136 ntBASIC2.51□□□□□ -2.01
CCDC61Q9Y6R9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CCDC61Q9Y6R9 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC2.5□□□□□ -2.01
CCDC61Q9Y6R9 SNORA63.6-201ENST00000364921 119 ntBASIC2.5□□□□□ -2.01
CCDC61Q9Y6R9 RNA5SP233-201ENST00000459153 113 ntBASIC2.5□□□□□ -2.01
CCDC61Q9Y6R9 AC079804.2-201ENST00000490376 200 ntBASIC2.5□□□□□ -2.01
CCDC61Q9Y6R9 AC002350.1-201ENST00000490759 375 ntBASIC2.5□□□□□ -2.01
CCDC61Q9Y6R9 MIR4299-201ENST00000577899 72 ntBASIC2.5□□□□□ -2.01
CCDC61Q9Y6R9 MIR8081-201ENST00000611533 95 ntBASIC2.5□□□□□ -2.01
CCDC61Q9Y6R9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC61Q9Y6R9 SNORA9.1-201ENST00000362412 131 ntBASIC2.49□□□□□ -2.01
CCDC61Q9Y6R9 MIR1827-201ENST00000408549 66 ntBASIC2.49□□□□□ -2.01
CCDC61Q9Y6R9 RNU1-40P-201ENST00000516816 164 ntBASIC2.49□□□□□ -2.01
CCDC61Q9Y6R9 RNU1-97P-201ENST00000516872 164 ntBASIC2.49□□□□□ -2.01
CCDC61Q9Y6R9 SNORA40.16-201ENST00000517238 121 ntBASIC2.49□□□□□ -2.01
CCDC61Q9Y6R9 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
CCDC61Q9Y6R9 RNU6-726P-201ENST00000364680 107 ntBASIC2.48□□□□□ -2.01
CCDC61Q9Y6R9 RNU6-1053P-201ENST00000515930 101 ntBASIC2.48□□□□□ -2.01
CCDC61Q9Y6R9 snoU13.31-201ENST00000607291 104 ntBASIC2.48□□□□□ -2.01
CCDC61Q9Y6R9 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC61Q9Y6R9 SNORA8.2-201ENST00000384372 139 ntBASIC2.47□□□□□ -2.01
CCDC61Q9Y6R9 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC61Q9Y6R9 MIR378A-201ENST00000362177 66 ntBASIC2.46□□□□□ -2.02
CCDC61Q9Y6R9 SNORD116-16-201ENST00000384533 92 ntBASIC2.46□□□□□ -2.02
CCDC61Q9Y6R9 MIR517C-201ENST00000385103 95 ntBASIC2.46□□□□□ -2.02
CCDC61Q9Y6R9 RNU6-910P-201ENST00000390844 107 ntBASIC2.46□□□□□ -2.02
CCDC61Q9Y6R9 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.45□□□□□ -2.02
CCDC61Q9Y6R9 Y_RNA.164-201ENST00000363709 102 ntBASIC2.45□□□□□ -2.02
CCDC61Q9Y6R9 RNU6-717P-201ENST00000459076 104 ntBASIC2.45□□□□□ -2.02
CCDC61Q9Y6R9 SCARNA17.3-201ENST00000516381 125 ntBASIC2.45□□□□□ -2.02
CCDC61Q9Y6R9 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC61Q9Y6R9 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC61Q9Y6R9 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC61Q9Y6R9 RNA5SP37-201ENST00000365420 130 ntBASIC2.44□□□□□ -2.02
CCDC61Q9Y6R9 RNU6-716P-201ENST00000365621 103 ntBASIC2.44□□□□□ -2.02
CCDC61Q9Y6R9 MIR545-201ENST00000385085 106 ntBASIC2.44□□□□□ -2.02
CCDC61Q9Y6R9 SNORA67.5-201ENST00000391036 107 ntBASIC2.44□□□□□ -2.02
CCDC61Q9Y6R9 RNU4-62P-201ENST00000410125 130 ntBASIC2.44□□□□□ -2.02
CCDC61Q9Y6R9 RNA5SP247-201ENST00000411181 105 ntBASIC2.44□□□□□ -2.02
CCDC61Q9Y6R9 MIR6895-201ENST00000613497 78 ntBASIC2.44□□□□□ -2.02
CCDC61Q9Y6R9 RNU6-838P-201ENST00000363399 108 ntBASIC2.43□□□□□ -2.02
CCDC61Q9Y6R9 SNORA40B-201ENST00000385573 128 ntBASIC2.43□□□□□ -2.02
CCDC61Q9Y6R9 AL021921.1-201ENST00000442774 93 ntBASIC2.43□□□□□ -2.02
CCDC61Q9Y6R9 SNORD79.1-201ENST00000516069 84 ntBASIC2.43□□□□□ -2.02
CCDC61Q9Y6R9 MIR6840-201ENST00000611937 71 ntBASIC2.43□□□□□ -2.02
CCDC61Q9Y6R9 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.43□□□□□ -2.02
CCDC61Q9Y6R9 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
CCDC61Q9Y6R9 RNU6-1246P-201ENST00000391064 107 ntBASIC2.42□□□□□ -2.02
CCDC61Q9Y6R9 RNU6-269P-201ENST00000391077 97 ntBASIC2.42□□□□□ -2.02
CCDC61Q9Y6R9 AP1B1P2-201ENST00000416196 106 ntBASIC2.42□□□□□ -2.02
CCDC61Q9Y6R9 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC61Q9Y6R9 Y_RNA.74-201ENST00000362911 99 ntBASIC2.41□□□□□ -2.02
CCDC61Q9Y6R9 SNORA16.1-201ENST00000364597 132 ntBASIC2.41□□□□□ -2.02
CCDC61Q9Y6R9 RNA5SP484-201ENST00000458857 111 ntBASIC2.41□□□□□ -2.02
CCDC61Q9Y6R9 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC61Q9Y6R9 MIR4303-201ENST00000581299 66 ntBASIC2.41□□□□□ -2.02
CCDC61Q9Y6R9 Y_RNA.407-201ENST00000383986 113 ntBASIC2.4□□□□□ -2.03
CCDC61Q9Y6R9 RNA5SP47-201ENST00000517230 109 ntBASIC2.4□□□□□ -2.03
CCDC61Q9Y6R9 CYP3A54P-201ENST00000566950 75 ntBASIC2.4□□□□□ -2.03
CCDC61Q9Y6R9 MIR527-201ENST00000385244 85 ntBASIC2.39□□□□□ -2.03
CCDC61Q9Y6R9 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
CCDC61Q9Y6R9 MIR4781-201ENST00000585250 76 ntBASIC2.39□□□□□ -2.03
CCDC61Q9Y6R9 MIR502-201ENST00000606349 86 ntBASIC2.39□□□□□ -2.03
CCDC61Q9Y6R9 RNA5SP338-201ENST00000410495 85 ntBASIC2.38□□□□□ -2.03
CCDC61Q9Y6R9 AL356379.1-201ENST00000414105 126 ntBASIC2.38□□□□□ -2.03
CCDC61Q9Y6R9 U6.96-201ENST00000636425 70 ntBASIC2.38□□□□□ -2.03
CCDC61Q9Y6R9 SNORD18A-201ENST00000363753 72 ntBASIC2.37□□□□□ -2.03
CCDC61Q9Y6R9 MIR652-201ENST00000385278 98 ntBASIC2.37□□□□□ -2.03
CCDC61Q9Y6R9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC61Q9Y6R9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.37□□□□□ -2.03
CCDC61Q9Y6R9 MIR3198-2-201ENST00000577868 80 ntBASIC2.37□□□□□ -2.03
CCDC61Q9Y6R9 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.37□□□□□ -2.03
CCDC61Q9Y6R9 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC61Q9Y6R9 RNU6-810P-201ENST00000364001 107 ntBASIC2.36□□□□□ -2.03
CCDC61Q9Y6R9 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CCDC61Q9Y6R9 RNU1-78P-201ENST00000391248 165 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 190.4 ms