Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 MIR644A-201ENST00000385262 94 ntBASIC1.8□□□□□ -2.12
ZC3H4Q9UPT8 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.8□□□□□ -2.12
ZC3H4Q9UPT8 RNU6-469P-201ENST00000516253 101 ntBASIC1.8□□□□□ -2.12
ZC3H4Q9UPT8 MIR26B-201ENST00000362251 77 ntBASIC1.79□□□□□ -2.12
ZC3H4Q9UPT8 SNORD45.1-201ENST00000363181 77 ntBASIC1.79□□□□□ -2.12
ZC3H4Q9UPT8 RNA5SP403-201ENST00000363598 108 ntBASIC1.79□□□□□ -2.12
ZC3H4Q9UPT8 RNU6-382P-201ENST00000365181 106 ntBASIC1.79□□□□□ -2.12
ZC3H4Q9UPT8 SNORA25-201ENST00000384384 134 ntBASIC1.79□□□□□ -2.12
ZC3H4Q9UPT8 RNA5SP327-201ENST00000362494 101 ntBASIC1.78□□□□□ -2.12
ZC3H4Q9UPT8 Y_RNA.205-201ENST00000364128 113 ntBASIC1.78□□□□□ -2.12
ZC3H4Q9UPT8 SNORD45A-201ENST00000384512 84 ntBASIC1.78□□□□□ -2.12
ZC3H4Q9UPT8 MIR548AG2-201ENST00000581228 64 ntBASIC1.78□□□□□ -2.12
ZC3H4Q9UPT8 MIR6788-201ENST00000618842 66 ntBASIC1.78□□□□□ -2.12
ZC3H4Q9UPT8 Y_RNA.258-201ENST00000364613 105 ntBASIC1.77□□□□□ -2.13
ZC3H4Q9UPT8 MIR548L-201ENST00000408303 86 ntBASIC1.77□□□□□ -2.13
ZC3H4Q9UPT8 AL354695.1-201ENST00000427935 228 ntBASIC1.77□□□□□ -2.13
ZC3H4Q9UPT8 MIR3920-201ENST00000581751 86 ntBASIC1.77□□□□□ -2.13
ZC3H4Q9UPT8 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.77□□□□□ -2.13
ZC3H4Q9UPT8 AC067863.3-201ENST00000624172 122 ntBASIC1.77□□□□□ -2.13
ZC3H4Q9UPT8 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
ZC3H4Q9UPT8 U6.111-201ENST00000636093 83 ntBASIC1.76□□□□□ -2.13
ZC3H4Q9UPT8 RNU6-604P-201ENST00000390917 100 ntBASIC1.75□□□□□ -2.13
ZC3H4Q9UPT8 AC244098.3-201ENST00000424803 96 ntBASIC1.75□□□□□ -2.13
ZC3H4Q9UPT8 AL691482.2-201ENST00000457453 84 ntBASIC1.75□□□□□ -2.13
ZC3H4Q9UPT8 AC002350.1-201ENST00000490759 375 ntBASIC1.75□□□□□ -2.13
ZC3H4Q9UPT8 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
ZC3H4Q9UPT8 Y_RNA.178-201ENST00000363832 102 ntBASIC1.74□□□□□ -2.13
ZC3H4Q9UPT8 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
ZC3H4Q9UPT8 RNU6-939P-201ENST00000384634 107 ntBASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 MIR520E-201ENST00000384867 87 ntBASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 MIR320A-201ENST00000385302 82 ntBASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 SNORD105-201ENST00000386910 85 ntBASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 FABP5P4-201ENST00000437203 171 ntBASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 RNU6-881P-201ENST00000516813 102 ntBASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 MIR3660-201ENST00000584845 100 ntBASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 MIR8053-201ENST00000613344 75 ntBASIC1.73□□□□□ -2.13
ZC3H4Q9UPT8 SNORD114-27-201ENST00000363766 70 ntBASIC1.72□□□□□ -2.13
ZC3H4Q9UPT8 RNU6-800P-201ENST00000384473 103 ntBASIC1.72□□□□□ -2.13
ZC3H4Q9UPT8 MIR617-201ENST00000385030 97 ntBASIC1.72□□□□□ -2.13
ZC3H4Q9UPT8 MIR216B-201ENST00000390186 82 ntBASIC1.72□□□□□ -2.13
ZC3H4Q9UPT8 Y_RNA.30-201ENST00000362572 97 ntBASIC1.71□□□□□ -2.14
ZC3H4Q9UPT8 RPS29P1-201ENST00000465274 159 ntBASIC1.71□□□□□ -2.14
ZC3H4Q9UPT8 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.71□□□□□ -2.14
ZC3H4Q9UPT8 RNU6-1110P-201ENST00000516462 101 ntBASIC1.71□□□□□ -2.14
ZC3H4Q9UPT8 MIR150-201ENST00000385048 84 ntBASIC1.7□□□□□ -2.14
ZC3H4Q9UPT8 MIR519E-201ENST00000385075 84 ntBASIC1.7□□□□□ -2.14
ZC3H4Q9UPT8 RNA5SP436-201ENST00000516020 115 ntBASIC1.7□□□□□ -2.14
ZC3H4Q9UPT8 RNU6-752P-201ENST00000516376 102 ntBASIC1.7□□□□□ -2.14
ZC3H4Q9UPT8 RNU6-135P-201ENST00000516769 101 ntBASIC1.7□□□□□ -2.14
ZC3H4Q9UPT8 AC244669.1-204ENST00000621564 178 ntBASIC1.7□□□□□ -2.14
ZC3H4Q9UPT8 SNORD75.2-201ENST00000408784 58 ntBASIC1.69□□□□□ -2.14
ZC3H4Q9UPT8 NAMPTP3-201ENST00000569273 224 ntBASIC1.69□□□□□ -2.14
ZC3H4Q9UPT8 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.69□□□□□ -2.14
ZC3H4Q9UPT8 SNORD115-22-201ENST00000364456 82 ntBASIC1.68□□□□□ -2.14
ZC3H4Q9UPT8 MIR618-201ENST00000385287 98 ntBASIC1.68□□□□□ -2.14
ZC3H4Q9UPT8 MIR548J-201ENST00000408833 112 ntBASIC1.68□□□□□ -2.14
ZC3H4Q9UPT8 RNU6-54P-201ENST00000365563 107 ntBASIC1.67□□□□□ -2.14
ZC3H4Q9UPT8 SNORD124-201ENST00000459577 104 ntBASIC1.67□□□□□ -2.14
ZC3H4Q9UPT8 MIR4639-201ENST00000584938 69 ntBASIC1.67□□□□□ -2.14
ZC3H4Q9UPT8 RNU6-716P-201ENST00000365621 103 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 MIR203A-201ENST00000384836 110 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 RNU6-630P-201ENST00000391258 106 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 MIR1304-201ENST00000408243 91 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 RNU7-74P-201ENST00000459104 62 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 U7.7-201ENST00000459276 60 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 MIR6509-201ENST00000614603 85 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 MIR6767-201ENST00000637302 66 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 Y_RNA.386-201ENST00000383913 105 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 SNORD28-201ENST00000384706 75 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 SNORA40.6-201ENST00000391153 128 ntBASIC1.66□□□□□ -2.14
ZC3H4Q9UPT8 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.65□□□□□ -2.15
ZC3H4Q9UPT8 SNORD113.1-201ENST00000363280 73 ntBASIC1.65□□□□□ -2.15
ZC3H4Q9UPT8 RNU6V-201ENST00000384105 107 ntBASIC1.65□□□□□ -2.15
ZC3H4Q9UPT8 MIR1265-201ENST00000408444 86 ntBASIC1.65□□□□□ -2.15
ZC3H4Q9UPT8 MIR548O2-201ENST00000616090 70 ntBASIC1.65□□□□□ -2.15
ZC3H4Q9UPT8 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
ZC3H4Q9UPT8 RNA5SP61-201ENST00000516453 100 ntBASIC1.64□□□□□ -2.15
ZC3H4Q9UPT8 RNU6-495P-201ENST00000362995 107 ntBASIC1.63□□□□□ -2.15
ZC3H4Q9UPT8 SNORD18A-201ENST00000363753 72 ntBASIC1.63□□□□□ -2.15
ZC3H4Q9UPT8 MIR3612-201ENST00000579753 87 ntBASIC1.63□□□□□ -2.15
ZC3H4Q9UPT8 AC005520.4-201ENST00000604337 90 ntBASIC1.63□□□□□ -2.15
ZC3H4Q9UPT8 RNU6-1216P-201ENST00000362590 107 ntBASIC1.62□□□□□ -2.15
ZC3H4Q9UPT8 RNU6-1039P-201ENST00000383931 107 ntBASIC1.62□□□□□ -2.15
ZC3H4Q9UPT8 MIR200A-201ENST00000384875 90 ntBASIC1.62□□□□□ -2.15
ZC3H4Q9UPT8 MIR573-201ENST00000384964 99 ntBASIC1.62□□□□□ -2.15
ZC3H4Q9UPT8 MIR3678-201ENST00000578455 94 ntBASIC1.62□□□□□ -2.15
ZC3H4Q9UPT8 RNU6-1335P-201ENST00000365426 107 ntBASIC1.61□□□□□ -2.15
ZC3H4Q9UPT8 Y_RNA.443-201ENST00000384135 111 ntBASIC1.61□□□□□ -2.15
ZC3H4Q9UPT8 AC093423.1-201ENST00000440817 142 ntBASIC1.61□□□□□ -2.15
ZC3H4Q9UPT8 RNU7-24P-201ENST00000458867 62 ntBASIC1.61□□□□□ -2.15
ZC3H4Q9UPT8 MIR4460-201ENST00000577862 86 ntBASIC1.61□□□□□ -2.15
ZC3H4Q9UPT8 MIR7974-201ENST00000615835 79 ntBASIC1.61□□□□□ -2.15
ZC3H4Q9UPT8 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
ZC3H4Q9UPT8 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.6□□□□□ -2.15
ZC3H4Q9UPT8 SNORA25.4-201ENST00000363666 124 ntBASIC1.59□□□□□ -2.16
ZC3H4Q9UPT8 MIR19B1-201ENST00000384829 87 ntBASIC1.59□□□□□ -2.16
ZC3H4Q9UPT8 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.59□□□□□ -2.16
ZC3H4Q9UPT8 SNORD41.1-201ENST00000391000 69 ntBASIC1.58□□□□□ -2.16
ZC3H4Q9UPT8 RNU6-982P-201ENST00000516216 102 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 164.6 ms