Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 NAMPTP3-201ENST00000569273 224 ntBASIC1.6□□□□□ -2.15
ATG3Q9NT62 MIR4511-201ENST00000582784 87 ntBASIC1.6□□□□□ -2.15
ATG3Q9NT62 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
ATG3Q9NT62 SNORD115-24-201ENST00000363528 82 ntBASIC1.59□□□□□ -2.15
ATG3Q9NT62 RNU6-499P-201ENST00000365615 107 ntBASIC1.59□□□□□ -2.15
ATG3Q9NT62 RNU6-910P-201ENST00000390844 107 ntBASIC1.59□□□□□ -2.15
ATG3Q9NT62 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.59□□□□□ -2.15
ATG3Q9NT62 RNU6-977P-201ENST00000516411 103 ntBASIC1.59□□□□□ -2.15
ATG3Q9NT62 RNU7-13P-201ENST00000516413 62 ntBASIC1.59□□□□□ -2.15
ATG3Q9NT62 MIR6734-201ENST00000621166 68 ntBASIC1.59□□□□□ -2.15
ATG3Q9NT62 MIR26B-201ENST00000362251 77 ntBASIC1.58□□□□□ -2.16
ATG3Q9NT62 RNA5SP327-201ENST00000362494 101 ntBASIC1.58□□□□□ -2.16
ATG3Q9NT62 RNU6-495P-201ENST00000362995 107 ntBASIC1.58□□□□□ -2.16
ATG3Q9NT62 SNORD115-44-201ENST00000365391 82 ntBASIC1.58□□□□□ -2.16
ATG3Q9NT62 RNU6-987P-201ENST00000384759 104 ntBASIC1.58□□□□□ -2.16
ATG3Q9NT62 RPS29P1-201ENST00000465274 159 ntBASIC1.58□□□□□ -2.16
ATG3Q9NT62 RNU6-752P-201ENST00000516376 102 ntBASIC1.58□□□□□ -2.16
ATG3Q9NT62 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
ATG3Q9NT62 MIR203A-201ENST00000384836 110 ntBASIC1.57□□□□□ -2.16
ATG3Q9NT62 SNORD75.2-201ENST00000408784 58 ntBASIC1.57□□□□□ -2.16
ATG3Q9NT62 RNU4-37P-201ENST00000410214 84 ntBASIC1.57□□□□□ -2.16
ATG3Q9NT62 SNORD79.1-201ENST00000516069 84 ntBASIC1.57□□□□□ -2.16
ATG3Q9NT62 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
ATG3Q9NT62 RNU6-1187P-201ENST00000364771 110 ntBASIC1.56□□□□□ -2.16
ATG3Q9NT62 MIR100-201ENST00000385259 80 ntBASIC1.56□□□□□ -2.16
ATG3Q9NT62 RNU1-119P-201ENST00000391122 165 ntBASIC1.56□□□□□ -2.16
ATG3Q9NT62 RNU6-994P-201ENST00000410507 111 ntBASIC1.56□□□□□ -2.16
ATG3Q9NT62 AC110620.1-201ENST00000416042 228 ntBASIC1.56□□□□□ -2.16
ATG3Q9NT62 AL691482.2-201ENST00000457453 84 ntBASIC1.56□□□□□ -2.16
ATG3Q9NT62 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
ATG3Q9NT62 SNORA80D-201ENST00000384488 135 ntBASIC1.55□□□□□ -2.16
ATG3Q9NT62 AC103706.3-201ENST00000636297 85 ntBASIC1.55□□□□□ -2.16
ATG3Q9NT62 RNU6-54P-201ENST00000365563 107 ntBASIC1.54□□□□□ -2.16
ATG3Q9NT62 RNU6-1039P-201ENST00000383931 107 ntBASIC1.54□□□□□ -2.16
ATG3Q9NT62 MIR520F-201ENST00000384824 87 ntBASIC1.54□□□□□ -2.16
ATG3Q9NT62 MIR519E-201ENST00000385075 84 ntBASIC1.54□□□□□ -2.16
ATG3Q9NT62 RNU7-24P-201ENST00000458867 62 ntBASIC1.54□□□□□ -2.16
ATG3Q9NT62 RNU7-90P-201ENST00000459216 62 ntBASIC1.54□□□□□ -2.16
ATG3Q9NT62 RNU7-104P-201ENST00000459398 79 ntBASIC1.54□□□□□ -2.16
ATG3Q9NT62 MIR633-201ENST00000384821 98 ntBASIC1.53□□□□□ -2.16
ATG3Q9NT62 MIR617-201ENST00000385030 97 ntBASIC1.53□□□□□ -2.16
ATG3Q9NT62 SNORD42B-201ENST00000458893 67 ntBASIC1.53□□□□□ -2.16
ATG3Q9NT62 AL136317.1-201ENST00000612653 226 ntBASIC1.53□□□□□ -2.16
ATG3Q9NT62 MIR6509-201ENST00000614603 85 ntBASIC1.53□□□□□ -2.16
ATG3Q9NT62 MIR548O2-201ENST00000616090 70 ntBASIC1.53□□□□□ -2.16
ATG3Q9NT62 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.53□□□□□ -2.16
ATG3Q9NT62 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
ATG3Q9NT62 MIR1-1-201ENST00000362147 71 ntBASIC1.52□□□□□ -2.17
ATG3Q9NT62 MIR7-2-201ENST00000384970 110 ntBASIC1.52□□□□□ -2.17
ATG3Q9NT62 MIR222-201ENST00000384992 110 ntBASIC1.52□□□□□ -2.17
ATG3Q9NT62 MIR644A-201ENST00000385262 94 ntBASIC1.51□□□□□ -2.17
ATG3Q9NT62 MIR1827-201ENST00000408549 66 ntBASIC1.51□□□□□ -2.17
ATG3Q9NT62 SNORA40.17-201ENST00000517256 115 ntBASIC1.51□□□□□ -2.17
ATG3Q9NT62 MIR548J-201ENST00000408833 112 ntBASIC1.5□□□□□ -2.17
ATG3Q9NT62 MIR6788-201ENST00000618842 66 ntBASIC1.5□□□□□ -2.17
ATG3Q9NT62 Y_RNA.174-201ENST00000363781 105 ntBASIC1.49□□□□□ -2.17
ATG3Q9NT62 RNU6-669P-201ENST00000365575 107 ntBASIC1.49□□□□□ -2.17
ATG3Q9NT62 SNORA25-201ENST00000384384 134 ntBASIC1.49□□□□□ -2.17
ATG3Q9NT62 AC067940.1-201ENST00000458411 300 ntBASIC1.49□□□□□ -2.17
ATG3Q9NT62 MIR3657-201ENST00000584818 117 ntBASIC1.49□□□□□ -2.17
ATG3Q9NT62 MIR6515-201ENST00000619843 57 ntBASIC1.49□□□□□ -2.17
ATG3Q9NT62 PVT1_3.1-201ENST00000620853 95 ntBASIC1.49□□□□□ -2.17
ATG3Q9NT62 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.48□□□□□ -2.17
ATG3Q9NT62 RNA5SP480-201ENST00000516840 109 ntBASIC1.48□□□□□ -2.17
ATG3Q9NT62 SNORA70.22-201ENST00000517160 124 ntBASIC1.48□□□□□ -2.17
ATG3Q9NT62 MIR4295-201ENST00000585286 85 ntBASIC1.48□□□□□ -2.17
ATG3Q9NT62 AC069503.3-201ENST00000618674 145 ntBASIC1.48□□□□□ -2.17
ATG3Q9NT62 AC073869.9-201ENST00000641610 120 ntBASIC1.48□□□□□ -2.17
ATG3Q9NT62 SNORA25.8-201ENST00000364831 128 ntBASIC1.47□□□□□ -2.17
ATG3Q9NT62 RNU6V-201ENST00000384105 107 ntBASIC1.47□□□□□ -2.17
ATG3Q9NT62 AC002429.1-201ENST00000437672 148 ntBASIC1.47□□□□□ -2.17
ATG3Q9NT62 AC002350.1-201ENST00000490759 375 ntBASIC1.47□□□□□ -2.17
ATG3Q9NT62 RNU6-1223P-201ENST00000517124 104 ntBASIC1.47□□□□□ -2.17
ATG3Q9NT62 MIR151B-201ENST00000584249 96 ntBASIC1.47□□□□□ -2.17
ATG3Q9NT62 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
ATG3Q9NT62 AC079150.2-201ENST00000443733 78 ntBASIC1.46□□□□□ -2.18
ATG3Q9NT62 AC087343.1-201ENST00000477341 475 ntBASIC1.46□□□□□ -2.18
ATG3Q9NT62 AC067863.3-201ENST00000624172 122 ntBASIC1.46□□□□□ -2.18
ATG3Q9NT62 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
ATG3Q9NT62 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
ATG3Q9NT62 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
ATG3Q9NT62 MIR373-201ENST00000362273 69 ntBASIC1.45□□□□□ -2.18
ATG3Q9NT62 RNU6-668P-201ENST00000364180 107 ntBASIC1.45□□□□□ -2.18
ATG3Q9NT62 RNU6-990P-201ENST00000364385 104 ntBASIC1.45□□□□□ -2.18
ATG3Q9NT62 RNU6-645P-201ENST00000364649 106 ntBASIC1.45□□□□□ -2.18
ATG3Q9NT62 Y_RNA.375-201ENST00000365625 101 ntBASIC1.45□□□□□ -2.18
ATG3Q9NT62 MIR618-201ENST00000385287 98 ntBASIC1.45□□□□□ -2.18
ATG3Q9NT62 AC092634.7-201ENST00000621022 103 ntBASIC1.45□□□□□ -2.18
ATG3Q9NT62 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.44□□□□□ -2.18
ATG3Q9NT62 RNU6-260P-201ENST00000384092 107 ntBASIC1.44□□□□□ -2.18
ATG3Q9NT62 MIR216B-201ENST00000390186 82 ntBASIC1.44□□□□□ -2.18
ATG3Q9NT62 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.44□□□□□ -2.18
ATG3Q9NT62 AC244669.1-204ENST00000621564 178 ntBASIC1.44□□□□□ -2.18
ATG3Q9NT62 SNORD41.1-201ENST00000391000 69 ntBASIC1.43□□□□□ -2.18
ATG3Q9NT62 MTND4LP1-201ENST00000446263 157 ntBASIC1.43□□□□□ -2.18
ATG3Q9NT62 RNA5SP404-201ENST00000517118 132 ntBASIC1.43□□□□□ -2.18
ATG3Q9NT62 RNU6-829P-201ENST00000363700 112 ntBASIC1.42□□□□□ -2.18
ATG3Q9NT62 SNORD28-201ENST00000384706 75 ntBASIC1.42□□□□□ -2.18
ATG3Q9NT62 RNA5SP436-201ENST00000516020 115 ntBASIC1.42□□□□□ -2.18
ATG3Q9NT62 RNA5SP147-201ENST00000516493 109 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 292.8 ms