Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU6-871P-201ENST00000516122 100 ntBASIC1.11□□□□□ -2.23
CLIP3Q96DZ5 MIR4295-201ENST00000585286 85 ntBASIC1.11□□□□□ -2.23
CLIP3Q96DZ5 RNU6-1177P-201ENST00000391058 104 ntBASIC1.1□□□□□ -2.23
CLIP3Q96DZ5 AC002350.1-201ENST00000490759 375 ntBASIC1.1□□□□□ -2.23
CLIP3Q96DZ5 RNU7-13P-201ENST00000516413 62 ntBASIC1.1□□□□□ -2.23
CLIP3Q96DZ5 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
CLIP3Q96DZ5 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
CLIP3Q96DZ5 SNORD114-27-201ENST00000363766 70 ntBASIC1.08□□□□□ -2.24
CLIP3Q96DZ5 RNU6-681P-201ENST00000364012 104 ntBASIC1.08□□□□□ -2.24
CLIP3Q96DZ5 MIR644A-201ENST00000385262 94 ntBASIC1.08□□□□□ -2.24
CLIP3Q96DZ5 MIR4452-201ENST00000583004 71 ntBASIC1.08□□□□□ -2.24
CLIP3Q96DZ5 MIR3675-201ENST00000583661 73 ntBASIC1.08□□□□□ -2.24
CLIP3Q96DZ5 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.08□□□□□ -2.24
CLIP3Q96DZ5 RNU6-382P-201ENST00000365181 106 ntBASIC1.07□□□□□ -2.24
CLIP3Q96DZ5 RNU6-1057P-201ENST00000517162 102 ntBASIC1.07□□□□□ -2.24
CLIP3Q96DZ5 RNU6-1335P-201ENST00000365426 107 ntBASIC1.06□□□□□ -2.24
CLIP3Q96DZ5 MIR617-201ENST00000385030 97 ntBASIC1.06□□□□□ -2.24
CLIP3Q96DZ5 MIR519E-201ENST00000385075 84 ntBASIC1.06□□□□□ -2.24
CLIP3Q96DZ5 SNORD105-201ENST00000386910 85 ntBASIC1.06□□□□□ -2.24
CLIP3Q96DZ5 MIR1265-201ENST00000408444 86 ntBASIC1.06□□□□□ -2.24
CLIP3Q96DZ5 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.06□□□□□ -2.24
CLIP3Q96DZ5 RNU7-104P-201ENST00000459398 79 ntBASIC1.06□□□□□ -2.24
CLIP3Q96DZ5 SNORD114-22-201ENST00000365423 72 ntBASIC1.05□□□□□ -2.24
CLIP3Q96DZ5 RNU6-649P-201ENST00000384463 107 ntBASIC1.05□□□□□ -2.24
CLIP3Q96DZ5 SNORD28-201ENST00000384706 75 ntBASIC1.05□□□□□ -2.24
CLIP3Q96DZ5 MIR154-201ENST00000385243 84 ntBASIC1.05□□□□□ -2.24
CLIP3Q96DZ5 RNU6-495P-201ENST00000362995 107 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 SNORD115-22-201ENST00000364456 82 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 MIR608-201ENST00000384820 100 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 SNORD41.1-201ENST00000391000 69 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 AC093423.1-201ENST00000440817 142 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 RNU7-24P-201ENST00000458867 62 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 RPL39P28-201ENST00000465655 155 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 MIR4639-201ENST00000584938 69 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 AL353765.1-201ENST00000605514 183 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 MIR548O2-201ENST00000616090 70 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 MIR4773-1-201ENST00000637203 78 ntBASIC1.04□□□□□ -2.24
CLIP3Q96DZ5 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 MIR96-201ENST00000362288 78 ntBASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 SNORD45A-201ENST00000384512 84 ntBASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 SNORD99-201ENST00000408612 74 ntBASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 SNORD75.2-201ENST00000408784 58 ntBASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 AL078603.1-201ENST00000603824 313 ntBASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 AC244669.1-204ENST00000621564 178 ntBASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 AC067863.3-201ENST00000624172 122 ntBASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 U6.111-201ENST00000636093 83 ntBASIC1.03□□□□□ -2.24
CLIP3Q96DZ5 SNORD45.1-201ENST00000363181 77 ntBASIC1.02□□□□□ -2.25
CLIP3Q96DZ5 SNORD18A-201ENST00000363753 72 ntBASIC1.02□□□□□ -2.25
CLIP3Q96DZ5 RNA5SP117-201ENST00000365294 118 ntBASIC1.02□□□□□ -2.25
CLIP3Q96DZ5 SNORD30.1-201ENST00000391309 70 ntBASIC1.02□□□□□ -2.25
CLIP3Q96DZ5 ACA64.5-201ENST00000516207 127 ntBASIC1.02□□□□□ -2.25
CLIP3Q96DZ5 RNU6-752P-201ENST00000516376 102 ntBASIC1.02□□□□□ -2.25
CLIP3Q96DZ5 RNU6-135P-201ENST00000516769 101 ntBASIC1.02□□□□□ -2.25
CLIP3Q96DZ5 AC211469.2-201ENST00000605461 205 ntBASIC1.02□□□□□ -2.25
CLIP3Q96DZ5 RNU6-726P-201ENST00000364680 107 ntBASIC1.01□□□□□ -2.25
CLIP3Q96DZ5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CLIP3Q96DZ5 RNU6-800P-201ENST00000384473 103 ntBASIC1.01□□□□□ -2.25
CLIP3Q96DZ5 RNU6-663P-201ENST00000391105 106 ntBASIC1.01□□□□□ -2.25
CLIP3Q96DZ5 RNU6-274P-201ENST00000459566 107 ntBASIC1.01□□□□□ -2.25
CLIP3Q96DZ5 RNA5SP47-201ENST00000517230 109 ntBASIC1.01□□□□□ -2.25
CLIP3Q96DZ5 NAMPTP3-201ENST00000569273 224 ntBASIC1.01□□□□□ -2.25
CLIP3Q96DZ5 RNU6-54P-201ENST00000365563 107 ntBASIC1□□□□□ -2.25
CLIP3Q96DZ5 SNORD116-24-201ENST00000384549 92 ntBASIC1□□□□□ -2.25
CLIP3Q96DZ5 MIR573-201ENST00000384964 99 ntBASIC1□□□□□ -2.25
CLIP3Q96DZ5 MIR216B-201ENST00000390186 82 ntBASIC1□□□□□ -2.25
CLIP3Q96DZ5 AC244098.3-201ENST00000424803 96 ntBASIC1□□□□□ -2.25
CLIP3Q96DZ5 SNORD114-21-201ENST00000606412 72 ntBASIC1□□□□□ -2.25
CLIP3Q96DZ5 Y_RNA.118-201ENST00000363300 101 ntBASIC0.99□□□□□ -2.25
CLIP3Q96DZ5 RNU6-604P-201ENST00000390917 100 ntBASIC0.99□□□□□ -2.25
CLIP3Q96DZ5 SNORD42B-201ENST00000458893 67 ntBASIC0.99□□□□□ -2.25
CLIP3Q96DZ5 MIR3678-201ENST00000578455 94 ntBASIC0.99□□□□□ -2.25
CLIP3Q96DZ5 MIR3612-201ENST00000579753 87 ntBASIC0.99□□□□□ -2.25
CLIP3Q96DZ5 RNU1-93P-201ENST00000364704 169 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 Y_RNA.340-201ENST00000365330 92 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 Y_RNA.355-201ENST00000365462 98 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 RNU6-1039P-201ENST00000383931 107 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 RNA5SP220-201ENST00000516298 104 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 RNU6-881P-201ENST00000516813 102 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 AC005520.4-201ENST00000604337 90 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 AC103810.9-201ENST00000606688 112 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 MIR8053-201ENST00000613344 75 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 MIR6734-201ENST00000621166 68 ntBASIC0.98□□□□□ -2.25
CLIP3Q96DZ5 SNORD113.1-201ENST00000363280 73 ntBASIC0.97□□□□□ -2.25
CLIP3Q96DZ5 MIR520E-201ENST00000384867 87 ntBASIC0.97□□□□□ -2.25
CLIP3Q96DZ5 AC125388.1-201ENST00000459631 156 ntBASIC0.97□□□□□ -2.25
CLIP3Q96DZ5 SNORA40.17-201ENST00000517256 115 ntBASIC0.97□□□□□ -2.25
CLIP3Q96DZ5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.96□□□□□ -2.26
CLIP3Q96DZ5 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
CLIP3Q96DZ5 RNU6V-201ENST00000384105 107 ntBASIC0.96□□□□□ -2.26
CLIP3Q96DZ5 RNU6-42P-201ENST00000384165 107 ntBASIC0.96□□□□□ -2.26
CLIP3Q96DZ5 MT-TY-201ENST00000387409 66 ntBASIC0.96□□□□□ -2.26
CLIP3Q96DZ5 AL691482.2-201ENST00000457453 84 ntBASIC0.96□□□□□ -2.26
CLIP3Q96DZ5 AC011195.1-201ENST00000578177 177 ntBASIC0.96□□□□□ -2.26
CLIP3Q96DZ5 MIR6828-201ENST00000636181 60 ntBASIC0.96□□□□□ -2.26
CLIP3Q96DZ5 Y_RNA.205-201ENST00000364128 113 ntBASIC0.95□□□□□ -2.26
CLIP3Q96DZ5 RNU6-471P-201ENST00000383944 106 ntBASIC0.95□□□□□ -2.26
CLIP3Q96DZ5 RNU6-269P-201ENST00000391077 97 ntBASIC0.95□□□□□ -2.26
CLIP3Q96DZ5 RNU7-74P-201ENST00000459104 62 ntBASIC0.95□□□□□ -2.26
CLIP3Q96DZ5 RPS29P1-201ENST00000465274 159 ntBASIC0.95□□□□□ -2.26
CLIP3Q96DZ5 PSMC1P5-201ENST00000512850 177 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 265.9 ms