Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SNORD113-8-201ENST00000363497 74 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 RNU6-132P-201ENST00000383863 107 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 Y_RNA.445-201ENST00000384168 102 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 Y_RNA.496-201ENST00000384444 101 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 RNU6-141P-201ENST00000410499 105 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 Y_RNA.701-201ENST00000516812 110 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 AL442128.1-201ENST00000615151 90 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 RNU6-616P-201ENST00000384353 107 ntBASIC-1.95□□□□□ -2.72
USF3Q68DE3 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.95□□□□□ -2.72
USF3Q68DE3 SNORD115-46-201ENST00000390982 71 ntBASIC-1.95□□□□□ -2.72
USF3Q68DE3 FGF7P7-201ENST00000514120 227 ntBASIC-1.95□□□□□ -2.72
USF3Q68DE3 AC092794.1-201ENST00000612734 582 ntBASIC-1.95□□□□□ -2.72
USF3Q68DE3 AC021753.1-201ENST00000635724 168 ntBASIC-1.95□□□□□ -2.72
USF3Q68DE3 RNU6-824P-201ENST00000363724 104 ntBASIC-1.95□□□□□ -2.72
USF3Q68DE3 RNU6-662P-201ENST00000384253 104 ntBASIC-1.95□□□□□ -2.72
USF3Q68DE3 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.95□□□□□ -2.72
USF3Q68DE3 SNORD18C-201ENST00000362704 69 ntBASIC-1.96□□□□□ -2.72
USF3Q68DE3 RNU6-363P-201ENST00000362895 105 ntBASIC-1.96□□□□□ -2.72
USF3Q68DE3 Y_RNA.88-201ENST00000363029 99 ntBASIC-1.96□□□□□ -2.72
USF3Q68DE3 RNU6-290P-201ENST00000365212 101 ntBASIC-1.96□□□□□ -2.72
USF3Q68DE3 Y_RNA.359-201ENST00000365498 102 ntBASIC-1.96□□□□□ -2.72
USF3Q68DE3 AL137067.1-201ENST00000615933 120 ntBASIC-1.96□□□□□ -2.72
USF3Q68DE3 AC025521.1-201ENST00000621624 286 ntBASIC-1.96□□□□□ -2.72
USF3Q68DE3 RNU6-106P-201ENST00000384405 107 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 DLEU2_1.1-201ENST00000612089 120 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 DLEU2_1.2-201ENST00000614667 120 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 RNU6-766P-201ENST00000362478 107 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 SNORD50.2-201ENST00000365465 70 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 MT-TI-201ENST00000387365 69 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 AL691482.2-201ENST00000457453 84 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 Y_RNA.635-201ENST00000459041 101 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 RNU6-699P-201ENST00000517081 110 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 MIR1255B1-201ENST00000636325 63 ntBASIC-1.97□□□□□ -2.72
USF3Q68DE3 MTND3P22-201ENST00000510932 243 ntBASIC-1.98□□□□□ -2.73
USF3Q68DE3 RNU6-478P-201ENST00000363904 110 ntBASIC-1.98□□□□□ -2.73
USF3Q68DE3 RNU6-1119P-201ENST00000384349 108 ntBASIC-1.98□□□□□ -2.73
USF3Q68DE3 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.98□□□□□ -2.73
USF3Q68DE3 RNU7-30P-201ENST00000516835 62 ntBASIC-1.98□□□□□ -2.73
USF3Q68DE3 AL513043.2-201ENST00000573941 143 ntBASIC-1.98□□□□□ -2.73
USF3Q68DE3 AC006254.2-201ENST00000603259 279 ntBASIC-1.98□□□□□ -2.73
USF3Q68DE3 U6.97-201ENST00000636904 101 ntBASIC-1.98□□□□□ -2.73
USF3Q68DE3 Y_RNA.41-201ENST00000362646 102 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 SNORD115-31-201ENST00000365318 82 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 MT-TW-201ENST00000387382 68 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 RNU6-976P-201ENST00000516086 111 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 SNORA25.1-201ENST00000362326 128 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 SNORA24B-201ENST00000384176 131 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 Y_RNA.485-201ENST00000384395 102 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 Y_RNA.509-201ENST00000384506 99 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 MIR520D-201ENST00000385002 87 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 MIR548AG1-201ENST00000579932 66 ntBASIC-1.99□□□□□ -2.73
USF3Q68DE3 RNU5F-1-201ENST00000362507 117 ntBASIC-2□□□□□ -2.73
USF3Q68DE3 MIR620-201ENST00000385232 95 ntBASIC-2□□□□□ -2.73
USF3Q68DE3 RNU7-85P-201ENST00000458851 63 ntBASIC-2□□□□□ -2.73
USF3Q68DE3 RNU6-314P-201ENST00000516574 104 ntBASIC-2□□□□□ -2.73
USF3Q68DE3 DLEU2_3.2-201ENST00000612883 73 ntBASIC-2□□□□□ -2.73
USF3Q68DE3 AC090574.1-201ENST00000623186 233 ntBASIC-2□□□□□ -2.73
USF3Q68DE3 RNU6-151P-201ENST00000364158 107 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 RNU6-382P-201ENST00000365181 106 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 RNU6-1051P-201ENST00000365471 102 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 SNORA63.7-201ENST00000365579 123 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 Y_RNA.512-201ENST00000384518 102 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 RNU6-861P-201ENST00000516745 106 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 RNU6-1271P-201ENST00000517049 105 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 AC006362.1-201ENST00000567392 174 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 MIR3170-201ENST00000582699 77 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 MIR5690-201ENST00000583739 73 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 SNORD81.2-201ENST00000365153 76 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 RNU6-1039P-201ENST00000383931 107 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 RNU6-643P-201ENST00000384018 107 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 SNORD2.1-201ENST00000458762 69 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 Z99129.1-201ENST00000612510 255 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 MIR4773-1-201ENST00000637203 78 ntBASIC-2.01□□□□□ -2.73
USF3Q68DE3 Y_RNA.154-201ENST00000363624 102 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 RNU6-309P-201ENST00000364573 106 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 RNU6-458P-201ENST00000384179 107 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 Y_RNA.507-201ENST00000384500 99 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 MTND4P17-201ENST00000470444 350 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 U6.58-201ENST00000613107 107 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 RNU1-115P-201ENST00000365329 160 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 RNU6-1009P-201ENST00000390996 107 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 MIR4744-201ENST00000581563 82 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 Y_RNA.773-201ENST00000607168 90 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 AL603755.1-201ENST00000619504 163 ntBASIC-2.02□□□□□ -2.73
USF3Q68DE3 MIR379-201ENST00000362218 67 ntBASIC-2.03□□□□□ -2.73
USF3Q68DE3 SNORD113-3-201ENST00000364830 72 ntBASIC-2.03□□□□□ -2.73
USF3Q68DE3 Y_RNA.483-201ENST00000384380 101 ntBASIC-2.03□□□□□ -2.73
USF3Q68DE3 MIR3064-201ENST00000581130 66 ntBASIC-2.03□□□□□ -2.73
USF3Q68DE3 AC113139.1-201ENST00000605049 239 ntBASIC-2.03□□□□□ -2.73
USF3Q68DE3 SNORD116-1-201ENST00000384335 95 ntBASIC-2.03□□□□□ -2.74
USF3Q68DE3 Y_RNA.553-201ENST00000384670 102 ntBASIC-2.03□□□□□ -2.74
USF3Q68DE3 RNU6-995P-201ENST00000391244 107 ntBASIC-2.03□□□□□ -2.74
USF3Q68DE3 MTND3P2-201ENST00000438452 342 ntBASIC-2.03□□□□□ -2.74
USF3Q68DE3 AC025253.1-201ENST00000613623 543 ntBASIC-2.03□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 209.1 ms