Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU6-617P-201ENST00000516147 107 ntBASIC0.04□□□□□ -2.4
PDLIM3Q53GG5 RNU6-473P-201ENST00000516164 107 ntBASIC0.04□□□□□ -2.4
PDLIM3Q53GG5 RNU6-1049P-201ENST00000516414 107 ntBASIC0.04□□□□□ -2.4
PDLIM3Q53GG5 AL513043.2-201ENST00000573941 143 ntBASIC0.04□□□□□ -2.4
PDLIM3Q53GG5 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
PDLIM3Q53GG5 YWHAEP2-201ENST00000580066 112 ntBASIC0.04□□□□□ -2.4
PDLIM3Q53GG5 MIR548AX-201ENST00000580117 73 ntBASIC0.04□□□□□ -2.4
PDLIM3Q53GG5 AC012531.4-201ENST00000616509 177 ntBASIC0.04□□□□□ -2.4
PDLIM3Q53GG5 RNU6-652P-201ENST00000365488 107 ntBASIC0.03□□□□□ -2.4
PDLIM3Q53GG5 SNORD101-201ENST00000384027 73 ntBASIC0.03□□□□□ -2.4
PDLIM3Q53GG5 MIR214-201ENST00000385214 110 ntBASIC0.03□□□□□ -2.4
PDLIM3Q53GG5 RNU6-1168P-201ENST00000390831 104 ntBASIC0.03□□□□□ -2.4
PDLIM3Q53GG5 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.03□□□□□ -2.4
PDLIM3Q53GG5 RNU6-313P-201ENST00000516317 112 ntBASIC0.03□□□□□ -2.4
PDLIM3Q53GG5 RNU5B-6P-201ENST00000516765 68 ntBASIC0.03□□□□□ -2.4
PDLIM3Q53GG5 MIR4677-201ENST00000584153 80 ntBASIC0.03□□□□□ -2.4
PDLIM3Q53GG5 Y_RNA.10-201ENST00000362371 110 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 RNU6-1056P-201ENST00000383996 107 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 SNORA19-201ENST00000384737 128 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 MIR106A-201ENST00000384870 81 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 MIR145-201ENST00000384967 88 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 MIR516B1-201ENST00000385211 90 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 RNA5SP451-201ENST00000410588 110 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 AL606753.1-201ENST00000427435 87 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 RNU6-65P-201ENST00000516332 98 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 RNU6-1057P-201ENST00000517162 102 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 SCARNA11.2-201ENST00000517183 154 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 MIR548AD-201ENST00000584780 82 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 AC084368.1-201ENST00000620935 65 ntBASIC0.02□□□□□ -2.41
PDLIM3Q53GG5 RNU6-664P-201ENST00000362381 107 ntBASIC0.01□□□□□ -2.41
PDLIM3Q53GG5 RNA5SP205-201ENST00000364653 136 ntBASIC0.01□□□□□ -2.41
PDLIM3Q53GG5 RNU6-813P-201ENST00000384691 107 ntBASIC0.01□□□□□ -2.41
PDLIM3Q53GG5 MIR1302-5-201ENST00000408164 150 ntBASIC0.01□□□□□ -2.41
PDLIM3Q53GG5 RNA5SP163-201ENST00000410304 99 ntBASIC0.01□□□□□ -2.41
PDLIM3Q53GG5 Y_RNA.601-201ENST00000410500 113 ntBASIC0.01□□□□□ -2.41
PDLIM3Q53GG5 MIR4696-201ENST00000581431 70 ntBASIC0.01□□□□□ -2.41
PDLIM3Q53GG5 MIR4536-1-201ENST00000583537 88 ntBASIC0.01□□□□□ -2.41
PDLIM3Q53GG5 MIRLET7F1-201ENST00000362202 87 ntBASIC0□□□□□ -2.41
PDLIM3Q53GG5 Y_RNA.125-201ENST00000363371 111 ntBASIC0□□□□□ -2.41
PDLIM3Q53GG5 SNORA42.1-201ENST00000363515 137 ntBASIC0□□□□□ -2.41
PDLIM3Q53GG5 SNORD114-28-201ENST00000363610 72 ntBASIC0□□□□□ -2.41
PDLIM3Q53GG5 MIR4777-201ENST00000583710 86 ntBASIC0□□□□□ -2.41
PDLIM3Q53GG5 MIR3925-201ENST00000584674 77 ntBASIC0□□□□□ -2.41
PDLIM3Q53GG5 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0□□□□□ -2.41
PDLIM3Q53GG5 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.01□□□□□ -2.41
PDLIM3Q53GG5 SCARNA23-201ENST00000516060 130 ntBASIC-0.01□□□□□ -2.41
PDLIM3Q53GG5 RNU6-782P-201ENST00000516852 104 ntBASIC-0.01□□□□□ -2.41
PDLIM3Q53GG5 MIR590-201ENST00000385008 97 ntBASIC-0.02□□□□□ -2.41
PDLIM3Q53GG5 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.02□□□□□ -2.41
PDLIM3Q53GG5 SNORA25.13-201ENST00000516395 103 ntBASIC-0.02□□□□□ -2.41
PDLIM3Q53GG5 MIR601-201ENST00000385256 79 ntBASIC-0.03□□□□□ -2.41
PDLIM3Q53GG5 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.03□□□□□ -2.41
PDLIM3Q53GG5 RNU6-109P-201ENST00000516364 107 ntBASIC-0.03□□□□□ -2.41
PDLIM3Q53GG5 RNU6-184P-201ENST00000516514 107 ntBASIC-0.03□□□□□ -2.41
PDLIM3Q53GG5 RNU6-719P-201ENST00000516671 104 ntBASIC-0.03□□□□□ -2.41
PDLIM3Q53GG5 MIR4439-201ENST00000583746 80 ntBASIC-0.03□□□□□ -2.41
PDLIM3Q53GG5 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.03□□□□□ -2.41
PDLIM3Q53GG5 AC069503.3-201ENST00000618674 145 ntBASIC-0.03□□□□□ -2.41
PDLIM3Q53GG5 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 RNU6-929P-201ENST00000384429 107 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 MIR1207-201ENST00000408249 87 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 MIR548H2-201ENST00000408874 88 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 RNU6-554P-201ENST00000410466 106 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 RNU2-51P-201ENST00000410708 197 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 AC093423.1-201ENST00000440817 142 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 RNU7-85P-201ENST00000458851 63 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 RNU6-75P-201ENST00000515944 104 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 RNU6-904P-201ENST00000516206 101 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 RNU6-479P-201ENST00000516348 105 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 U4.2-201ENST00000618561 85 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 uc_338.10-201ENST00000621872 182 ntBASIC-0.04□□□□□ -2.42
PDLIM3Q53GG5 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.05□□□□□ -2.42
PDLIM3Q53GG5 MIR451A-201ENST00000385059 72 ntBASIC-0.05□□□□□ -2.42
PDLIM3Q53GG5 RNU6-644P-201ENST00000391155 98 ntBASIC-0.05□□□□□ -2.42
PDLIM3Q53GG5 MIR548AE1-201ENST00000583292 70 ntBASIC-0.05□□□□□ -2.42
PDLIM3Q53GG5 MIR6514-201ENST00000622549 70 ntBASIC-0.05□□□□□ -2.42
PDLIM3Q53GG5 RNU6-756P-201ENST00000383997 107 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 MT-TY-201ENST00000387409 66 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 MIR892B-201ENST00000401279 77 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 RNU6-935P-201ENST00000410371 100 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 RNU6-519P-201ENST00000410590 108 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 RNU7-159P-201ENST00000459284 62 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 FGF7P7-201ENST00000514120 227 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 RNU6-162P-201ENST00000516228 103 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 RNU7-188P-201ENST00000517063 64 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 RNU6-762P-201ENST00000517107 102 ntBASIC-0.06□□□□□ -2.42
PDLIM3Q53GG5 RNU6-106P-201ENST00000384405 107 ntBASIC-0.07□□□□□ -2.42
PDLIM3Q53GG5 SNORA75.1-201ENST00000391130 148 ntBASIC-0.07□□□□□ -2.42
PDLIM3Q53GG5 RNU4-61P-201ENST00000411243 107 ntBASIC-0.07□□□□□ -2.42
PDLIM3Q53GG5 RNU7-61P-201ENST00000515897 61 ntBASIC-0.07□□□□□ -2.42
PDLIM3Q53GG5 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.07□□□□□ -2.42
PDLIM3Q53GG5 MIR4290-201ENST00000583807 95 ntBASIC-0.07□□□□□ -2.42
PDLIM3Q53GG5 MIR8064-201ENST00000612863 90 ntBASIC-0.07□□□□□ -2.42
PDLIM3Q53GG5 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.08□□□□□ -2.42
PDLIM3Q53GG5 RNU6-132P-201ENST00000383863 107 ntBASIC-0.08□□□□□ -2.42
PDLIM3Q53GG5 RNU6-154P-201ENST00000384306 106 ntBASIC-0.08□□□□□ -2.42
PDLIM3Q53GG5 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 291.7 ms