Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR4723-201ENST00000585070 81 ntBASIC0.63□□□□□ -2.31
COL4A4P53420 MIR664A-201ENST00000626086 82 ntBASIC0.63□□□□□ -2.31
COL4A4P53420 RNU6-208P-201ENST00000362431 107 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 Y_RNA.207-201ENST00000364142 106 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNA5SP245-201ENST00000364239 121 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-686P-201ENST00000364839 107 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-439P-201ENST00000384188 106 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 MIR519A1-201ENST00000385257 85 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-910P-201ENST00000390844 107 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU7-102P-201ENST00000458948 62 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-287P-201ENST00000516230 98 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-1108P-201ENST00000516308 104 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-977P-201ENST00000516411 103 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RN7SKP88-201ENST00000516847 250 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-765P-201ENST00000516916 99 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 MIR4514-201ENST00000581410 57 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 7SK.8-201ENST00000612110 250 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
COL4A4P53420 7SK.11-201ENST00000615477 250 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 7SK.13-201ENST00000622040 250 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 AC027335.2-201ENST00000624030 375 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
COL4A4P53420 Y_RNA.13-201ENST00000362403 112 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 SNORA8.1-201ENST00000384250 140 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 SNORA80D-201ENST00000384488 135 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 MIR154-201ENST00000385243 84 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 SNORD100-201ENST00000408573 76 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 SNORD83.1-201ENST00000411362 77 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 AC074348.1-201ENST00000426503 132 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 AC114801.3-201ENST00000510231 177 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 Y_RNA.660-201ENST00000516002 120 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 SNORD79.1-201ENST00000516069 84 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-303P-201ENST00000517091 106 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 AC106800.4-201ENST00000614905 153 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 uc_338.16-201ENST00000621804 95 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 Y_RNA.788-201ENST00000622394 112 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 U6.100-201ENST00000636230 99 ntBASIC0.62□□□□□ -2.31
COL4A4P53420 RNU6-369P-201ENST00000362515 102 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 RNU6-340P-201ENST00000364005 107 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 RNU6-411P-201ENST00000384451 107 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 Y_RNA.606-201ENST00000410579 103 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 RNU7-21P-201ENST00000459430 62 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 SNORA31.2-201ENST00000516019 134 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 Y_RNA.809-201ENST00000516058 95 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 MIR4771-2-201ENST00000577758 74 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 MIR4771-1-201ENST00000582617 74 ntBASIC0.61□□□□□ -2.31
COL4A4P53420 MIR409-201ENST00000362237 79 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 SNORD101-201ENST00000384027 73 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
COL4A4P53420 RNU1-119P-201ENST00000391122 165 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 SNORA75.2-201ENST00000391138 150 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 RNU6-466P-201ENST00000391224 103 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 SNORA75.3-201ENST00000391231 150 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 U3.27-201ENST00000391237 200 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 RNU6-587P-201ENST00000391282 106 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
COL4A4P53420 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 RPL39P28-201ENST00000465655 155 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 RNU6-687P-201ENST00000516443 89 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 RNU6-807P-201ENST00000516805 107 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 MTRNR2L2-201ENST00000604882 87 ntBASIC0.6□□□□□ -2.31
COL4A4P53420 MIR1-1-201ENST00000362147 71 ntBASIC0.59□□□□□ -2.31
COL4A4P53420 SNORA31.14-201ENST00000516728 116 ntBASIC0.59□□□□□ -2.31
COL4A4P53420 MIR3140-201ENST00000583685 90 ntBASIC0.59□□□□□ -2.31
COL4A4P53420 AC104996.3-201ENST00000590718 94 ntBASIC0.59□□□□□ -2.31
COL4A4P53420 RNU6-471P-201ENST00000383944 106 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 Y_RNA.532-201ENST00000384590 113 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 MIR520F-201ENST00000384824 87 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 MIR599-201ENST00000385069 95 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 MIR216B-201ENST00000390186 82 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 MIR938-201ENST00000401216 83 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 MIR1257-201ENST00000408490 117 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.59□□□□□ -2.32
COL4A4P53420 AC244505.6-201ENST00000452829 130 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 SNORA70.22-201ENST00000517160 124 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 AC008608.1-201ENST00000603910 127 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 MIR8053-201ENST00000613344 75 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 TRDV1-202ENST00000621643 102 ntBASIC0.59□□□□□ -2.32
COL4A4P53420 MIR617-201ENST00000385030 97 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 RNU6-1177P-201ENST00000391058 104 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 AC097635.1-201ENST00000450678 155 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 RNU7-24P-201ENST00000458867 62 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 U7.7-201ENST00000459276 60 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 AC104692.1-201ENST00000472406 90 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 AC097510.1-201ENST00000510945 133 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 AC023827.1-201ENST00000569247 97 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 MIR4676-201ENST00000583078 72 ntBASIC0.58□□□□□ -2.32
COL4A4P53420 RNU6-495P-201ENST00000362995 107 ntBASIC0.57□□□□□ -2.32
COL4A4P53420 Y_RNA.174-201ENST00000363781 105 ntBASIC0.57□□□□□ -2.32
COL4A4P53420 SNORA24B-201ENST00000384176 131 ntBASIC0.57□□□□□ -2.32
COL4A4P53420 RNU6-1065P-201ENST00000384513 106 ntBASIC0.57□□□□□ -2.32
COL4A4P53420 SNORD89-201ENST00000390981 114 ntBASIC0.57□□□□□ -2.32
COL4A4P53420 RNU6-634P-201ENST00000459134 106 ntBASIC0.57□□□□□ -2.32
COL4A4P53420 RNU6-871P-201ENST00000516122 100 ntBASIC0.57□□□□□ -2.32
COL4A4P53420 RNA5SP404-201ENST00000517118 132 ntBASIC0.57□□□□□ -2.32
COL4A4P53420 RNU6-1241P-201ENST00000384536 107 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 RNU6-540P-201ENST00000384622 101 ntBASIC0.56□□□□□ -2.32
COL4A4P53420 SNORD90-201ENST00000391145 111 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 194.7 ms