Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 AC015712.3-201ENST00000559380 164 ntBASIC1.38□□□□□ -2.19
SSU72Q9NP77 U6.81-201ENST00000612550 106 ntBASIC1.38□□□□□ -2.19
SSU72Q9NP77 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.38□□□□□ -2.19
SSU72Q9NP77 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.38□□□□□ -2.19
SSU72Q9NP77 RNU6-1335P-201ENST00000365426 107 ntBASIC1.37□□□□□ -2.19
SSU72Q9NP77 SNORD105-201ENST00000386910 85 ntBASIC1.37□□□□□ -2.19
SSU72Q9NP77 U7.7-201ENST00000459276 60 ntBASIC1.37□□□□□ -2.19
SSU72Q9NP77 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
SSU72Q9NP77 SNORA67.6-201ENST00000391093 99 ntBASIC1.36□□□□□ -2.19
SSU72Q9NP77 U3.27-201ENST00000391237 200 ntBASIC1.36□□□□□ -2.19
SSU72Q9NP77 AC114801.3-201ENST00000510231 177 ntBASIC1.36□□□□□ -2.19
SSU72Q9NP77 SNORD53B-201ENST00000577887 78 ntBASIC1.36□□□□□ -2.19
SSU72Q9NP77 MIR4769-201ENST00000584126 77 ntBASIC1.36□□□□□ -2.19
SSU72Q9NP77 RNU7-104P-201ENST00000459398 79 ntBASIC1.35□□□□□ -2.19
SSU72Q9NP77 Y_RNA.681-201ENST00000516445 113 ntBASIC1.35□□□□□ -2.19
SSU72Q9NP77 AL353997.5-201ENST00000618886 171 ntBASIC1.35□□□□□ -2.19
SSU72Q9NP77 SNORD28-201ENST00000384706 75 ntBASIC1.34□□□□□ -2.19
SSU72Q9NP77 RNU6-1177P-201ENST00000391058 104 ntBASIC1.34□□□□□ -2.19
SSU72Q9NP77 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
SSU72Q9NP77 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.34□□□□□ -2.19
SSU72Q9NP77 RNA5SP432-201ENST00000362480 116 ntBASIC1.33□□□□□ -2.2
SSU72Q9NP77 RNA5SP117-201ENST00000365294 118 ntBASIC1.33□□□□□ -2.2
SSU72Q9NP77 MIR519E-201ENST00000385075 84 ntBASIC1.33□□□□□ -2.2
SSU72Q9NP77 RNU6-955P-201ENST00000410497 104 ntBASIC1.33□□□□□ -2.2
SSU72Q9NP77 FABP5P4-201ENST00000437203 171 ntBASIC1.33□□□□□ -2.2
SSU72Q9NP77 MIR617-201ENST00000385030 97 ntBASIC1.32□□□□□ -2.2
SSU72Q9NP77 RNU6-587P-201ENST00000391282 106 ntBASIC1.32□□□□□ -2.2
SSU72Q9NP77 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.32□□□□□ -2.2
SSU72Q9NP77 RNU6-634P-201ENST00000459134 106 ntBASIC1.32□□□□□ -2.2
SSU72Q9NP77 RNU6-1057P-201ENST00000517162 102 ntBASIC1.32□□□□□ -2.2
SSU72Q9NP77 AC244669.1-204ENST00000621564 178 ntBASIC1.32□□□□□ -2.2
SSU72Q9NP77 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
SSU72Q9NP77 SNORA7.1-201ENST00000363750 139 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 RNU6-382P-201ENST00000365181 106 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 SNORA8.1-201ENST00000384250 140 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 RNU6-1241P-201ENST00000384536 107 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 RNU6-788P-201ENST00000390967 104 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 RNA5SP404-201ENST00000517118 132 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 MIR4639-201ENST00000584938 69 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 AC067863.3-201ENST00000624172 122 ntBASIC1.31□□□□□ -2.2
SSU72Q9NP77 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
SSU72Q9NP77 SNORD18A-201ENST00000363753 72 ntBASIC1.3□□□□□ -2.2
SSU72Q9NP77 RNU1-124P-201ENST00000363861 145 ntBASIC1.3□□□□□ -2.2
SSU72Q9NP77 SNORD115-31-201ENST00000365318 82 ntBASIC1.3□□□□□ -2.2
SSU72Q9NP77 MIR200A-201ENST00000384875 90 ntBASIC1.3□□□□□ -2.2
SSU72Q9NP77 MIR573-201ENST00000384964 99 ntBASIC1.3□□□□□ -2.2
SSU72Q9NP77 SNORD41.1-201ENST00000391000 69 ntBASIC1.3□□□□□ -2.2
SSU72Q9NP77 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.3□□□□□ -2.2
SSU72Q9NP77 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SSU72Q9NP77 RNU6-540P-201ENST00000384622 101 ntBASIC1.29□□□□□ -2.2
SSU72Q9NP77 MIR764-201ENST00000390811 85 ntBASIC1.29□□□□□ -2.2
SSU72Q9NP77 RNA5SP458-201ENST00000516188 119 ntBASIC1.29□□□□□ -2.2
SSU72Q9NP77 MIR3678-201ENST00000578455 94 ntBASIC1.29□□□□□ -2.2
SSU72Q9NP77 MIR3612-201ENST00000579753 87 ntBASIC1.29□□□□□ -2.2
SSU72Q9NP77 MIR548O2-201ENST00000616090 70 ntBASIC1.29□□□□□ -2.2
SSU72Q9NP77 RNU6-681P-201ENST00000364012 104 ntBASIC1.28□□□□□ -2.2
SSU72Q9NP77 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
SSU72Q9NP77 AC093423.1-201ENST00000440817 142 ntBASIC1.28□□□□□ -2.2
SSU72Q9NP77 RNA5SP47-201ENST00000517230 109 ntBASIC1.28□□□□□ -2.2
SSU72Q9NP77 MIR3675-201ENST00000583661 73 ntBASIC1.28□□□□□ -2.2
SSU72Q9NP77 RNU6-726P-201ENST00000364680 107 ntBASIC1.27□□□□□ -2.21
SSU72Q9NP77 SNORA67.5-201ENST00000391036 107 ntBASIC1.27□□□□□ -2.21
SSU72Q9NP77 RNA5SP255-201ENST00000516370 107 ntBASIC1.27□□□□□ -2.21
SSU72Q9NP77 RNU6-539P-201ENST00000516665 103 ntBASIC1.27□□□□□ -2.21
SSU72Q9NP77 RNU6-135P-201ENST00000516769 101 ntBASIC1.27□□□□□ -2.21
SSU72Q9NP77 MIR26B-201ENST00000362251 77 ntBASIC1.26□□□□□ -2.21
SSU72Q9NP77 RNU6-495P-201ENST00000362995 107 ntBASIC1.26□□□□□ -2.21
SSU72Q9NP77 RNA5SP190-201ENST00000365222 118 ntBASIC1.26□□□□□ -2.21
SSU72Q9NP77 RNU1-92P-201ENST00000517017 135 ntBASIC1.26□□□□□ -2.21
SSU72Q9NP77 MIR4773-1-201ENST00000637203 78 ntBASIC1.26□□□□□ -2.21
SSU72Q9NP77 RNU6-871P-201ENST00000516122 100 ntBASIC1.25□□□□□ -2.21
SSU72Q9NP77 MIR3660-201ENST00000584845 100 ntBASIC1.25□□□□□ -2.21
SSU72Q9NP77 AL078603.1-201ENST00000603824 313 ntBASIC1.25□□□□□ -2.21
SSU72Q9NP77 RNA5SP99-201ENST00000364020 114 ntBASIC1.24□□□□□ -2.21
SSU72Q9NP77 SNORD114-24-201ENST00000365029 72 ntBASIC1.24□□□□□ -2.21
SSU72Q9NP77 RNU6-54P-201ENST00000365563 107 ntBASIC1.24□□□□□ -2.21
SSU72Q9NP77 MIR150-201ENST00000385048 84 ntBASIC1.24□□□□□ -2.21
SSU72Q9NP77 RNU7-24P-201ENST00000458867 62 ntBASIC1.24□□□□□ -2.21
SSU72Q9NP77 NAMPTP3-201ENST00000569273 224 ntBASIC1.24□□□□□ -2.21
SSU72Q9NP77 MIR337-201ENST00000362281 93 ntBASIC1.23□□□□□ -2.21
SSU72Q9NP77 SNORA40.6-201ENST00000391153 128 ntBASIC1.23□□□□□ -2.21
SSU72Q9NP77 SNORD75.2-201ENST00000408784 58 ntBASIC1.23□□□□□ -2.21
SSU72Q9NP77 AC025627.3-201ENST00000582078 182 ntBASIC1.23□□□□□ -2.21
SSU72Q9NP77 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.23□□□□□ -2.21
SSU72Q9NP77 RNU1-17P-201ENST00000363022 152 ntBASIC1.22□□□□□ -2.21
SSU72Q9NP77 SNORD115-22-201ENST00000364456 82 ntBASIC1.22□□□□□ -2.21
SSU72Q9NP77 Y_RNA.386-201ENST00000383913 105 ntBASIC1.22□□□□□ -2.21
SSU72Q9NP77 MIR154-201ENST00000385243 84 ntBASIC1.22□□□□□ -2.21
SSU72Q9NP77 MIR216B-201ENST00000390186 82 ntBASIC1.22□□□□□ -2.21
SSU72Q9NP77 AC244098.3-201ENST00000424803 96 ntBASIC1.22□□□□□ -2.21
SSU72Q9NP77 SNORD42B-201ENST00000458893 67 ntBASIC1.22□□□□□ -2.21
SSU72Q9NP77 RNU6-469P-201ENST00000516253 101 ntBASIC1.22□□□□□ -2.21
SSU72Q9NP77 SNORD99-201ENST00000408612 74 ntBASIC1.21□□□□□ -2.22
SSU72Q9NP77 MIR6828-201ENST00000636181 60 ntBASIC1.21□□□□□ -2.22
SSU72Q9NP77 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.2□□□□□ -2.22
SSU72Q9NP77 SNORD45.1-201ENST00000363181 77 ntBASIC1.2□□□□□ -2.22
SSU72Q9NP77 SNORA36.1-201ENST00000363424 132 ntBASIC1.2□□□□□ -2.22
SSU72Q9NP77 RNU6-590P-201ENST00000365039 107 ntBASIC1.2□□□□□ -2.22
SSU72Q9NP77 RNU6-716P-201ENST00000365621 103 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms