Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SNORD114-31-201ENST00000363219 75 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 RNU6-704P-201ENST00000364162 103 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 SNORD116-14-201ENST00000383894 92 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 SNORD116-17-201ENST00000383929 92 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 SNORD116-15-201ENST00000384445 92 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 SNORD116-19-201ENST00000384729 92 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 MIR2113-201ENST00000459007 91 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 SNORA25.13-201ENST00000516395 103 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 MIR3925-201ENST00000584674 77 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 AL627230.5-201ENST00000619807 58 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 U6.100-201ENST00000636230 99 ntBASIC-0.05□□□□□ -2.42
LIME1Q9H400 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 RNU6-832P-201ENST00000363319 107 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 RNU6-652P-201ENST00000365488 107 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 MIR876-201ENST00000401147 81 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 RNA5SP25-201ENST00000410815 110 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 AP001180.6-201ENST00000584918 159 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 AC096720.1-201ENST00000604441 183 ntBASIC-0.06□□□□□ -2.42
LIME1Q9H400 RNY3P2-201ENST00000362918 102 ntBASIC-0.07□□□□□ -2.42
LIME1Q9H400 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.07□□□□□ -2.42
LIME1Q9H400 SNORA75.1-201ENST00000391130 148 ntBASIC-0.07□□□□□ -2.42
LIME1Q9H400 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.07□□□□□ -2.42
LIME1Q9H400 AC068339.1-201ENST00000526965 141 ntBASIC-0.07□□□□□ -2.42
LIME1Q9H400 AC069503.3-201ENST00000618674 145 ntBASIC-0.07□□□□□ -2.42
LIME1Q9H400 RNU6-957P-201ENST00000363652 99 ntBASIC-0.08□□□□□ -2.42
LIME1Q9H400 RNU6-756P-201ENST00000383997 107 ntBASIC-0.08□□□□□ -2.42
LIME1Q9H400 MIR593-201ENST00000384856 100 ntBASIC-0.08□□□□□ -2.42
LIME1Q9H400 AL161932.1-201ENST00000437408 146 ntBASIC-0.08□□□□□ -2.42
LIME1Q9H400 RNU6-774P-201ENST00000363238 107 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 U8.6-201ENST00000364939 135 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 SNORA51.5-201ENST00000384126 131 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 RNU6-480P-201ENST00000384332 107 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
LIME1Q9H400 RNU6-466P-201ENST00000391224 103 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 RNU7-165P-201ENST00000458864 60 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 RNU6-287P-201ENST00000516230 98 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 IGLVI-20-201ENST00000519296 130 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 AL670379.3-201ENST00000605040 251 ntBASIC-0.09□□□□□ -2.42
LIME1Q9H400 RNU6-302P-201ENST00000365249 107 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 MIR214-201ENST00000385214 110 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 MIR548A3-201ENST00000385297 97 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 Z95118.1-201ENST00000421372 247 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 snoU13.19-201ENST00000459148 104 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 RNU7-159P-201ENST00000459284 62 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 MIR5009-201ENST00000578736 100 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 MIR4439-201ENST00000583746 80 ntBASIC-0.1□□□□□ -2.43
LIME1Q9H400 RNA5SP98-201ENST00000363158 137 ntBASIC-0.11□□□□□ -2.43
LIME1Q9H400 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.11□□□□□ -2.43
LIME1Q9H400 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.11□□□□□ -2.43
LIME1Q9H400 RNU6-758P-201ENST00000516292 89 ntBASIC-0.11□□□□□ -2.43
LIME1Q9H400 RNU6-180P-201ENST00000516697 61 ntBASIC-0.11□□□□□ -2.43
LIME1Q9H400 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.11□□□□□ -2.43
LIME1Q9H400 MIR3613-201ENST00000579844 87 ntBASIC-0.11□□□□□ -2.43
LIME1Q9H400 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.11□□□□□ -2.43
LIME1Q9H400 MIR148A-201ENST00000362215 68 ntBASIC-0.12□□□□□ -2.43
LIME1Q9H400 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.12□□□□□ -2.43
LIME1Q9H400 RNU6-880P-201ENST00000384526 107 ntBASIC-0.12□□□□□ -2.43
LIME1Q9H400 snoU13.11-201ENST00000459219 104 ntBASIC-0.12□□□□□ -2.43
LIME1Q9H400 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.12□□□□□ -2.43
LIME1Q9H400 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.12□□□□□ -2.43
LIME1Q9H400 RNU6-959P-201ENST00000384671 107 ntBASIC-0.13□□□□□ -2.43
LIME1Q9H400 MIR181B2-201ENST00000385004 89 ntBASIC-0.13□□□□□ -2.43
LIME1Q9H400 MIR548A1-201ENST00000385041 97 ntBASIC-0.13□□□□□ -2.43
LIME1Q9H400 MT-TY-201ENST00000387409 66 ntBASIC-0.13□□□□□ -2.43
LIME1Q9H400 AC109327.2-201ENST00000448339 378 ntBASIC-0.13□□□□□ -2.43
LIME1Q9H400 MIR101-1-201ENST00000362265 75 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 RNA5SP368-201ENST00000364298 116 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 RNU6-81P-201ENST00000365608 104 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 SNORD101-201ENST00000384027 73 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 RNU6-929P-201ENST00000384429 107 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 MIR604-201ENST00000384880 94 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 RNA5SP163-201ENST00000410304 99 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 AC104692.1-201ENST00000472406 90 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 RNU6-75P-201ENST00000515944 104 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 CR383656.4-201ENST00000546909 122 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 MIR4460-201ENST00000577862 86 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 MIR4696-201ENST00000581431 70 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 AC025521.1-201ENST00000621624 286 ntBASIC-0.14□□□□□ -2.43
LIME1Q9H400 SNORD95.1-201ENST00000364099 68 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 SNORD45B-201ENST00000364617 72 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 RNU6-30P-201ENST00000384561 107 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 MIR516B1-201ENST00000385211 90 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 YWHAEP2-201ENST00000580066 112 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 MIR4473-201ENST00000583731 91 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 AC108676.2-201ENST00000605225 163 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 AC084368.1-201ENST00000620935 65 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 MIR1295B-201ENST00000636144 60 ntBASIC-0.15□□□□□ -2.43
LIME1Q9H400 RNU6-664P-201ENST00000362381 107 ntBASIC-0.16□□□□□ -2.44
LIME1Q9H400 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.16□□□□□ -2.44
LIME1Q9H400 RNU6-935P-201ENST00000410371 100 ntBASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 319.4 ms