Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU6-816P-201ENST00000390914 107 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 RNU6-1268P-201ENST00000391214 107 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 RNU6-1239P-201ENST00000391310 107 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 MTND4LP9-201ENST00000427694 174 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 AC025166.1-201ENST00000612411 163 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 MIR548O2-201ENST00000616090 70 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 AL035470.1-201ENST00000622571 220 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 AL162726.3-218ENST00000636401 95 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 MIR4788-201ENST00000639104 80 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 RNU6-664P-201ENST00000362381 107 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 RNA5SP98-201ENST00000363158 137 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 SNORD114-28-201ENST00000363610 72 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 RNA5SP275-201ENST00000363936 118 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 SNORD114-29-201ENST00000364819 70 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 MIR9-2-201ENST00000384838 87 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 MIR6759-201ENST00000638110 65 ntBASIC-0.5□□□□□ -2.49
CCDC54Q8NEL0 SNORD14C-201ENST00000365382 88 ntBASIC-0.51□□□□□ -2.49
CCDC54Q8NEL0 SNORD101-201ENST00000384027 73 ntBASIC-0.51□□□□□ -2.49
CCDC54Q8NEL0 AC096531.1-201ENST00000419107 107 ntBASIC-0.51□□□□□ -2.49
CCDC54Q8NEL0 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.51□□□□□ -2.49
CCDC54Q8NEL0 AC025521.1-201ENST00000621624 286 ntBASIC-0.51□□□□□ -2.49
CCDC54Q8NEL0 RNY4P6-201ENST00000363667 96 ntBASIC-0.52□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.52□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.52□□□□□ -2.49
CCDC54Q8NEL0 MIR582-201ENST00000365731 98 ntBASIC-0.52□□□□□ -2.49
CCDC54Q8NEL0 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.52□□□□□ -2.49
CCDC54Q8NEL0 MIR8064-201ENST00000612863 90 ntBASIC-0.52□□□□□ -2.49
CCDC54Q8NEL0 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.52□□□□□ -2.49
CCDC54Q8NEL0 RNU6-54P-201ENST00000365563 107 ntBASIC-0.53□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.53□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.53□□□□□ -2.49
CCDC54Q8NEL0 RNU6-455P-201ENST00000384681 107 ntBASIC-0.53□□□□□ -2.49
CCDC54Q8NEL0 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.53□□□□□ -2.49
CCDC54Q8NEL0 AC097510.1-201ENST00000510945 133 ntBASIC-0.53□□□□□ -2.49
CCDC54Q8NEL0 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.53□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.54□□□□□ -2.5
CCDC54Q8NEL0 Y_RNA.507-201ENST00000384500 99 ntBASIC-0.54□□□□□ -2.5
CCDC54Q8NEL0 MIR196A2-201ENST00000385189 110 ntBASIC-0.54□□□□□ -2.5
CCDC54Q8NEL0 RNU7-85P-201ENST00000458851 63 ntBASIC-0.54□□□□□ -2.5
CCDC54Q8NEL0 SNORD126-201ENST00000459475 77 ntBASIC-0.54□□□□□ -2.5
CCDC54Q8NEL0 RNU6-772P-201ENST00000516042 105 ntBASIC-0.54□□□□□ -2.5
CCDC54Q8NEL0 MIR20A-201ENST00000362279 71 ntBASIC-0.55□□□□□ -2.5
CCDC54Q8NEL0 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.55□□□□□ -2.5
CCDC54Q8NEL0 RNU6-466P-201ENST00000391224 103 ntBASIC-0.55□□□□□ -2.5
CCDC54Q8NEL0 RNU6-257P-201ENST00000410238 98 ntBASIC-0.55□□□□□ -2.5
CCDC54Q8NEL0 SNORD42B-201ENST00000458893 67 ntBASIC-0.55□□□□□ -2.5
CCDC54Q8NEL0 RNU7-107P-201ENST00000459121 61 ntBASIC-0.55□□□□□ -2.5
CCDC54Q8NEL0 RNU7-200P-201ENST00000516105 62 ntBASIC-0.55□□□□□ -2.5
CCDC54Q8NEL0 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.56□□□□□ -2.5
CCDC54Q8NEL0 SNORD56B-201ENST00000384713 71 ntBASIC-0.56□□□□□ -2.5
CCDC54Q8NEL0 RNU6-935P-201ENST00000410371 100 ntBASIC-0.56□□□□□ -2.5
CCDC54Q8NEL0 AC244090.1-201ENST00000441884 93 ntBASIC-0.56□□□□□ -2.5
CCDC54Q8NEL0 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.56□□□□□ -2.5
CCDC54Q8NEL0 RNU6-182P-201ENST00000516970 105 ntBASIC-0.56□□□□□ -2.5
CCDC54Q8NEL0 RNU6-86P-201ENST00000606534 107 ntBASIC-0.56□□□□□ -2.5
CCDC54Q8NEL0 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.56□□□□□ -2.5
CCDC54Q8NEL0 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.57□□□□□ -2.5
CCDC54Q8NEL0 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.57□□□□□ -2.5
CCDC54Q8NEL0 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.57□□□□□ -2.5
CCDC54Q8NEL0 RNU6-255P-201ENST00000516957 105 ntBASIC-0.57□□□□□ -2.5
CCDC54Q8NEL0 RNA5SP169-201ENST00000517268 117 ntBASIC-0.57□□□□□ -2.5
CCDC54Q8NEL0 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 RNU6-832P-201ENST00000363319 107 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 SNORD50.2-201ENST00000365465 70 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 MIR451A-201ENST00000385059 72 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 MIR548E-201ENST00000408287 88 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 MIR1912-201ENST00000410389 80 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 RNU6-346P-201ENST00000516288 111 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 RNU6-762P-201ENST00000517107 102 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 AP000676.1-201ENST00000533307 52 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 MIR4694-201ENST00000578534 80 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 MIR4432-201ENST00000581823 84 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 MIR4263-201ENST00000584745 83 ntBASIC-0.58□□□□□ -2.5
CCDC54Q8NEL0 RNU6-132P-201ENST00000383863 107 ntBASIC-0.59□□□□□ -2.5
CCDC54Q8NEL0 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.59□□□□□ -2.5
CCDC54Q8NEL0 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.59□□□□□ -2.5
CCDC54Q8NEL0 AL513043.2-201ENST00000573941 143 ntBASIC-0.59□□□□□ -2.5
CCDC54Q8NEL0 MIR4679-2-201ENST00000578358 77 ntBASIC-0.59□□□□□ -2.5
CCDC54Q8NEL0 MIR4280-201ENST00000582178 76 ntBASIC-0.59□□□□□ -2.5
CCDC54Q8NEL0 AP001180.6-201ENST00000584918 159 ntBASIC-0.59□□□□□ -2.5
CCDC54Q8NEL0 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.6□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.6□□□□□ -2.51
CCDC54Q8NEL0 RNU6-480P-201ENST00000384332 107 ntBASIC-0.6□□□□□ -2.51
CCDC54Q8NEL0 SNORA32.3-201ENST00000384772 121 ntBASIC-0.6□□□□□ -2.51
CCDC54Q8NEL0 uc_338.36-201ENST00000622331 158 ntBASIC-0.6□□□□□ -2.51
CCDC54Q8NEL0 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.61□□□□□ -2.51
CCDC54Q8NEL0 RNU6-900P-201ENST00000384498 102 ntBASIC-0.61□□□□□ -2.51
CCDC54Q8NEL0 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.61□□□□□ -2.51
CCDC54Q8NEL0 RNU6-719P-201ENST00000516671 104 ntBASIC-0.61□□□□□ -2.51
CCDC54Q8NEL0 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.61□□□□□ -2.51
CCDC54Q8NEL0 RNA5SP66-201ENST00000517178 101 ntBASIC-0.61□□□□□ -2.51
CCDC54Q8NEL0 MIR548Z-201ENST00000584743 97 ntBASIC-0.61□□□□□ -2.51
CCDC54Q8NEL0 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.61□□□□□ -2.51
CCDC54Q8NEL0 AL157777.2-201ENST00000258070 137 ntBASIC-0.62□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms