Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 Y_RNA.174-201ENST00000363781 105 ntBASIC1.38□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-1296P-201ENST00000383879 107 ntBASIC1.38□□□□□ -2.19
USHBP1Q8N6Y0 SNORD101-201ENST00000384027 73 ntBASIC1.38□□□□□ -2.19
USHBP1Q8N6Y0 MIR7-2-201ENST00000384970 110 ntBASIC1.38□□□□□ -2.19
USHBP1Q8N6Y0 Y_RNA.596-201ENST00000410462 109 ntBASIC1.38□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-1223P-201ENST00000517124 104 ntBASIC1.38□□□□□ -2.19
USHBP1Q8N6Y0 AL136317.1-201ENST00000612653 226 ntBASIC1.38□□□□□ -2.19
USHBP1Q8N6Y0 MIR26B-201ENST00000362251 77 ntBASIC1.37□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-161P-201ENST00000363051 106 ntBASIC1.37□□□□□ -2.19
USHBP1Q8N6Y0 MIR150-201ENST00000385048 84 ntBASIC1.37□□□□□ -2.19
USHBP1Q8N6Y0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
USHBP1Q8N6Y0 MTRNR2L2-201ENST00000604882 87 ntBASIC1.37□□□□□ -2.19
USHBP1Q8N6Y0 MIRLET7A1-201ENST00000362295 80 ntBASIC1.36□□□□□ -2.19
USHBP1Q8N6Y0 Y_RNA.264-201ENST00000364665 102 ntBASIC1.36□□□□□ -2.19
USHBP1Q8N6Y0 RNA5SP480-201ENST00000516840 109 ntBASIC1.36□□□□□ -2.19
USHBP1Q8N6Y0 uc_338.16-201ENST00000621804 95 ntBASIC1.36□□□□□ -2.19
USHBP1Q8N6Y0 U6.100-201ENST00000636230 99 ntBASIC1.36□□□□□ -2.19
USHBP1Q8N6Y0 RNY4P3-201ENST00000365254 95 ntBASIC1.35□□□□□ -2.19
USHBP1Q8N6Y0 SNORD77.2-201ENST00000391045 68 ntBASIC1.35□□□□□ -2.19
USHBP1Q8N6Y0 FABP5P4-201ENST00000437203 171 ntBASIC1.35□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-1108P-201ENST00000516308 104 ntBASIC1.35□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-1265P-201ENST00000516342 103 ntBASIC1.35□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-1110P-201ENST00000516462 101 ntBASIC1.35□□□□□ -2.19
USHBP1Q8N6Y0 SNORA31.14-201ENST00000516728 116 ntBASIC1.35□□□□□ -2.19
USHBP1Q8N6Y0 U7.4-201ENST00000614961 63 ntBASIC1.35□□□□□ -2.19
USHBP1Q8N6Y0 RNU4-38P-201ENST00000364472 129 ntBASIC1.34□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-1051P-201ENST00000365471 102 ntBASIC1.34□□□□□ -2.19
USHBP1Q8N6Y0 U7.7-201ENST00000459276 60 ntBASIC1.34□□□□□ -2.19
USHBP1Q8N6Y0 SNORD89-201ENST00000390981 114 ntBASIC1.33□□□□□ -2.2
USHBP1Q8N6Y0 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.33□□□□□ -2.2
USHBP1Q8N6Y0 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.33□□□□□ -2.2
USHBP1Q8N6Y0 AC145423.2-201ENST00000610631 239 ntBASIC1.33□□□□□ -2.2
USHBP1Q8N6Y0 RNU6-208P-201ENST00000362431 107 ntBASIC1.32□□□□□ -2.2
USHBP1Q8N6Y0 Y_RNA.32-201ENST00000362589 110 ntBASIC1.32□□□□□ -2.2
USHBP1Q8N6Y0 RNA5SP117-201ENST00000365294 118 ntBASIC1.32□□□□□ -2.2
USHBP1Q8N6Y0 MIR19B1-201ENST00000384829 87 ntBASIC1.32□□□□□ -2.2
USHBP1Q8N6Y0 MIR520H-201ENST00000385126 88 ntBASIC1.32□□□□□ -2.2
USHBP1Q8N6Y0 SNORD90-201ENST00000391145 111 ntBASIC1.32□□□□□ -2.2
USHBP1Q8N6Y0 MIR1285-1-201ENST00000408593 84 ntBASIC1.32□□□□□ -2.2
USHBP1Q8N6Y0 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.32□□□□□ -2.2
USHBP1Q8N6Y0 MIR4698-201ENST00000577795 80 ntBASIC1.31□□□□□ -2.2
USHBP1Q8N6Y0 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 SNORD115-24-201ENST00000363528 82 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 Y_RNA.207-201ENST00000364142 106 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 SNORA25.8-201ENST00000364831 128 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 SNORD115-44-201ENST00000365391 82 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 MIR200A-201ENST00000384875 90 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 RNU6-935P-201ENST00000410371 100 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 snoU13.17-201ENST00000458802 104 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 AC002350.1-201ENST00000490759 375 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 AC211469.2-201ENST00000605461 205 ntBASIC1.3□□□□□ -2.2
USHBP1Q8N6Y0 RNU5F-1-201ENST00000362507 117 ntBASIC1.29□□□□□ -2.2
USHBP1Q8N6Y0 SNORD105-201ENST00000386910 85 ntBASIC1.29□□□□□ -2.2
USHBP1Q8N6Y0 RNU6-287P-201ENST00000516230 98 ntBASIC1.29□□□□□ -2.2
USHBP1Q8N6Y0 MIR5000-201ENST00000577717 103 ntBASIC1.29□□□□□ -2.2
USHBP1Q8N6Y0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.29□□□□□ -2.2
USHBP1Q8N6Y0 MIR889-201ENST00000401280 79 ntBASIC1.28□□□□□ -2.2
USHBP1Q8N6Y0 RNA5SP404-201ENST00000517118 132 ntBASIC1.28□□□□□ -2.2
USHBP1Q8N6Y0 RNU6-1057P-201ENST00000517162 102 ntBASIC1.28□□□□□ -2.2
USHBP1Q8N6Y0 YWHAEP2-201ENST00000580066 112 ntBASIC1.28□□□□□ -2.2
USHBP1Q8N6Y0 YWHAEP3-201ENST00000582767 121 ntBASIC1.28□□□□□ -2.2
USHBP1Q8N6Y0 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.28□□□□□ -2.2
USHBP1Q8N6Y0 MIR1297-201ENST00000637311 77 ntBASIC1.28□□□□□ -2.2
USHBP1Q8N6Y0 RNA5SP403-201ENST00000363598 108 ntBASIC1.27□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-1229P-201ENST00000364295 107 ntBASIC1.27□□□□□ -2.21
USHBP1Q8N6Y0 MIR942-201ENST00000401111 86 ntBASIC1.27□□□□□ -2.21
USHBP1Q8N6Y0 RNU7-13P-201ENST00000516413 62 ntBASIC1.27□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-807P-201ENST00000516805 107 ntBASIC1.27□□□□□ -2.21
USHBP1Q8N6Y0 MIR3140-201ENST00000583685 90 ntBASIC1.27□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-939P-201ENST00000384634 107 ntBASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 MIR598-201ENST00000384868 97 ntBASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 U3.27-201ENST00000391237 200 ntBASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-1052P-201ENST00000411398 104 ntBASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-719P-201ENST00000516671 104 ntBASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-135P-201ENST00000516769 101 ntBASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 AC025627.3-201ENST00000582078 182 ntBASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.26□□□□□ -2.21
USHBP1Q8N6Y0 Y_RNA.12-201ENST00000362393 112 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 RNU1-124P-201ENST00000363861 145 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 MIR532-201ENST00000385025 91 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 MIR451A-201ENST00000385059 72 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 MIR644A-201ENST00000385262 94 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 MIR618-201ENST00000385287 98 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 SNORD124-201ENST00000459577 104 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-303P-201ENST00000517091 106 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 CYP3A137P-201ENST00000562436 69 ntBASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.25□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-469P-201ENST00000516253 101 ntBASIC1.24□□□□□ -2.21
USHBP1Q8N6Y0 RNU7-161P-201ENST00000517289 62 ntBASIC1.24□□□□□ -2.21
USHBP1Q8N6Y0 MIR6779-201ENST00000617283 64 ntBASIC1.24□□□□□ -2.21
USHBP1Q8N6Y0 AC067863.3-201ENST00000624172 122 ntBASIC1.24□□□□□ -2.21
USHBP1Q8N6Y0 SNORD114-24-201ENST00000365029 72 ntBASIC1.23□□□□□ -2.21
USHBP1Q8N6Y0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.23□□□□□ -2.21
USHBP1Q8N6Y0 MIR3920-201ENST00000581751 86 ntBASIC1.23□□□□□ -2.21
USHBP1Q8N6Y0 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
USHBP1Q8N6Y0 Y_RNA.545-201ENST00000384652 105 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 201.8 ms