Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 RNU6-495P-201ENST00000362995 107 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 SNORD115-24-201ENST00000363528 82 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 RNU6-668P-201ENST00000364180 107 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 RNA5SP190-201ENST00000365222 118 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 RNU6-669P-201ENST00000365575 107 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 RNU6-1126P-201ENST00000384002 107 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 RNU6-977P-201ENST00000516411 103 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 SNORA31.14-201ENST00000516728 116 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 MIR4804-201ENST00000581683 73 ntBASIC1.55□□□□□ -2.16
ATG4DQ86TL0 SNORA25.15-201ENST00000516487 89 ntBASIC1.54□□□□□ -2.16
ATG4DQ86TL0 MIR3920-201ENST00000581751 86 ntBASIC1.54□□□□□ -2.16
ATG4DQ86TL0 RNU6-54P-201ENST00000365563 107 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 MIR30A-201ENST00000385092 71 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 RNU6-994P-201ENST00000410507 111 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 AC108667.1-201ENST00000428618 249 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 MTND4LP1-201ENST00000446263 157 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 RNU7-56P-201ENST00000458744 62 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 RNA5SP458-201ENST00000516188 119 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 RN7SKP88-201ENST00000516847 250 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 RNU7-161P-201ENST00000517289 62 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 7SK.8-201ENST00000612110 250 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 7SK.11-201ENST00000615477 250 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 AC092634.7-201ENST00000621022 103 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 7SK.13-201ENST00000622040 250 ntBASIC1.53□□□□□ -2.16
ATG4DQ86TL0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.53□□□□□ -2.17
ATG4DQ86TL0 SNORD33-201ENST00000362761 85 ntBASIC1.52□□□□□ -2.17
ATG4DQ86TL0 RNA5SP403-201ENST00000363598 108 ntBASIC1.52□□□□□ -2.17
ATG4DQ86TL0 RNU1-119P-201ENST00000391122 165 ntBASIC1.52□□□□□ -2.17
ATG4DQ86TL0 MIR4255-201ENST00000579351 72 ntBASIC1.52□□□□□ -2.17
ATG4DQ86TL0 uc_338.16-201ENST00000621804 95 ntBASIC1.52□□□□□ -2.17
ATG4DQ86TL0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
ATG4DQ86TL0 RNU6-829P-201ENST00000363700 112 ntBASIC1.51□□□□□ -2.17
ATG4DQ86TL0 MIR100-201ENST00000385259 80 ntBASIC1.51□□□□□ -2.17
ATG4DQ86TL0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.51□□□□□ -2.17
ATG4DQ86TL0 RNU7-24P-201ENST00000458867 62 ntBASIC1.51□□□□□ -2.17
ATG4DQ86TL0 RNU7-104P-201ENST00000459398 79 ntBASIC1.51□□□□□ -2.17
ATG4DQ86TL0 RNU7-21P-201ENST00000459430 62 ntBASIC1.51□□□□□ -2.17
ATG4DQ86TL0 MIR3122-201ENST00000577243 73 ntBASIC1.51□□□□□ -2.17
ATG4DQ86TL0 RNU6-1079P-201ENST00000362861 110 ntBASIC1.5□□□□□ -2.17
ATG4DQ86TL0 AL591704.2-201ENST00000421658 181 ntBASIC1.5□□□□□ -2.17
ATG4DQ86TL0 MIR4303-201ENST00000581299 66 ntBASIC1.5□□□□□ -2.17
ATG4DQ86TL0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
ATG4DQ86TL0 RNA5SP192-201ENST00000364404 120 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 RNU6-645P-201ENST00000364649 106 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 MIR520F-201ENST00000384824 87 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 MIR519E-201ENST00000385075 84 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 SNORD42B-201ENST00000458893 67 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 RNU6-542P-201ENST00000516405 103 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 MIR3657-201ENST00000584818 117 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 MIR548O2-201ENST00000616090 70 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 AC073869.9-201ENST00000641610 120 ntBASIC1.49□□□□□ -2.17
ATG4DQ86TL0 Y_RNA.236-201ENST00000364427 111 ntBASIC1.48□□□□□ -2.17
ATG4DQ86TL0 Y_RNA.375-201ENST00000365625 101 ntBASIC1.48□□□□□ -2.17
ATG4DQ86TL0 MIR617-201ENST00000385030 97 ntBASIC1.48□□□□□ -2.17
ATG4DQ86TL0 RNU6-910P-201ENST00000390844 107 ntBASIC1.48□□□□□ -2.17
ATG4DQ86TL0 AC067940.1-201ENST00000458411 300 ntBASIC1.48□□□□□ -2.17
ATG4DQ86TL0 RNU1-123P-201ENST00000458950 160 ntBASIC1.48□□□□□ -2.17
ATG4DQ86TL0 MIR466-201ENST00000580653 84 ntBASIC1.48□□□□□ -2.17
ATG4DQ86TL0 MIR502-201ENST00000606349 86 ntBASIC1.48□□□□□ -2.17
ATG4DQ86TL0 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
ATG4DQ86TL0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.47□□□□□ -2.17
ATG4DQ86TL0 MIR1-1-201ENST00000362147 71 ntBASIC1.47□□□□□ -2.17
ATG4DQ86TL0 SNORA25.5-201ENST00000363782 126 ntBASIC1.47□□□□□ -2.17
ATG4DQ86TL0 RNU6V-201ENST00000384105 107 ntBASIC1.47□□□□□ -2.17
ATG4DQ86TL0 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
ATG4DQ86TL0 RNA5SP147-201ENST00000516493 109 ntBASIC1.47□□□□□ -2.17
ATG4DQ86TL0 SNORA44.1-201ENST00000517031 108 ntBASIC1.47□□□□□ -2.17
ATG4DQ86TL0 AL136317.1-201ENST00000612653 226 ntBASIC1.47□□□□□ -2.17
ATG4DQ86TL0 Y_RNA.174-201ENST00000363781 105 ntBASIC1.46□□□□□ -2.18
ATG4DQ86TL0 RNU6-260P-201ENST00000384092 107 ntBASIC1.46□□□□□ -2.18
ATG4DQ86TL0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.46□□□□□ -2.18
ATG4DQ86TL0 RNU4-62P-201ENST00000410125 130 ntBASIC1.46□□□□□ -2.18
ATG4DQ86TL0 RNU7-90P-201ENST00000459216 62 ntBASIC1.46□□□□□ -2.18
ATG4DQ86TL0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.46□□□□□ -2.18
ATG4DQ86TL0 RNU6-990P-201ENST00000364385 104 ntBASIC1.45□□□□□ -2.18
ATG4DQ86TL0 RNA5SP363-201ENST00000365072 115 ntBASIC1.45□□□□□ -2.18
ATG4DQ86TL0 Y_RNA.338-201ENST00000365320 114 ntBASIC1.45□□□□□ -2.18
ATG4DQ86TL0 SNORA80D-201ENST00000384488 135 ntBASIC1.45□□□□□ -2.18
ATG4DQ86TL0 MIR644A-201ENST00000385262 94 ntBASIC1.45□□□□□ -2.18
ATG4DQ86TL0 MIR216B-201ENST00000390186 82 ntBASIC1.45□□□□□ -2.18
ATG4DQ86TL0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.45□□□□□ -2.18
ATG4DQ86TL0 RNA5SP299-201ENST00000391203 116 ntBASIC1.44□□□□□ -2.18
ATG4DQ86TL0 AC067863.3-201ENST00000624172 122 ntBASIC1.44□□□□□ -2.18
ATG4DQ86TL0 SCARNA21.1-201ENST00000515996 128 ntBASIC1.43□□□□□ -2.18
ATG4DQ86TL0 SNORD79.1-201ENST00000516069 84 ntBASIC1.43□□□□□ -2.18
ATG4DQ86TL0 SNORA40.17-201ENST00000517256 115 ntBASIC1.43□□□□□ -2.18
ATG4DQ86TL0 AL359821.1-201ENST00000605519 182 ntBASIC1.43□□□□□ -2.18
ATG4DQ86TL0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.43□□□□□ -2.18
ATG4DQ86TL0 RNU6-446P-201ENST00000362827 106 ntBASIC1.42□□□□□ -2.18
ATG4DQ86TL0 RNU1-78P-201ENST00000391248 165 ntBASIC1.42□□□□□ -2.18
ATG4DQ86TL0 MIR4781-201ENST00000585250 76 ntBASIC1.42□□□□□ -2.18
ATG4DQ86TL0 RMST_2.1-201ENST00000617263 136 ntBASIC1.42□□□□□ -2.18
ATG4DQ86TL0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
ATG4DQ86TL0 MIR1323-201ENST00000408090 73 ntBASIC1.41□□□□□ -2.18
ATG4DQ86TL0 AC008834.1-201ENST00000511612 175 ntBASIC1.41□□□□□ -2.18
ATG4DQ86TL0 RNU6-656P-201ENST00000516785 107 ntBASIC1.41□□□□□ -2.18
ATG4DQ86TL0 MIR4285-201ENST00000581001 85 ntBASIC1.41□□□□□ -2.18
ATG4DQ86TL0 BX248123.2-201ENST00000606318 124 ntBASIC1.41□□□□□ -2.18
ATG4DQ86TL0 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.41□□□□□ -2.18
ATG4DQ86TL0 MIR378A-201ENST00000362177 66 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms