Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 Y_RNA.363-201ENST00000365529 113 ntBASIC2.07□□□□□ -2.08
FOXC1Q12948 MT-TY-201ENST00000387409 66 ntBASIC2.07□□□□□ -2.08
FOXC1Q12948 RNU7-104P-201ENST00000459398 79 ntBASIC2.07□□□□□ -2.08
FOXC1Q12948 AC048334.1-201ENST00000477975 159 ntBASIC2.07□□□□□ -2.08
FOXC1Q12948 AC018659.1-201ENST00000551083 169 ntBASIC2.07□□□□□ -2.08
FOXC1Q12948 MIR4713-201ENST00000582691 75 ntBASIC2.07□□□□□ -2.08
FOXC1Q12948 U4.4-201ENST00000620626 117 ntBASIC2.07□□□□□ -2.08
FOXC1Q12948 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
FOXC1Q12948 SNORD23.1-201ENST00000408212 104 ntBASIC2.06□□□□□ -2.08
FOXC1Q12948 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXC1Q12948 MIR4446-201ENST00000578505 67 ntBASIC2.06□□□□□ -2.08
FOXC1Q12948 MIR6766-201ENST00000622641 72 ntBASIC2.06□□□□□ -2.08
FOXC1Q12948 AC067863.3-201ENST00000624172 122 ntBASIC2.06□□□□□ -2.08
FOXC1Q12948 Z82195.2-201ENST00000612348 18351 ntBASIC2.06□□□□□ -2.08
FOXC1Q12948 RNU6-1162P-201ENST00000384443 104 ntBASIC2.05□□□□□ -2.08
FOXC1Q12948 SNORD113-2-201ENST00000391082 72 ntBASIC2.05□□□□□ -2.08
FOXC1Q12948 U2.7-201ENST00000619197 100 ntBASIC2.05□□□□□ -2.08
FOXC1Q12948 AC010297.1-201ENST00000623948 149 ntBASIC2.05□□□□□ -2.08
FOXC1Q12948 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
FOXC1Q12948 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
FOXC1Q12948 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.04□□□□□ -2.08
FOXC1Q12948 RNU1-119P-201ENST00000391122 165 ntBASIC2.04□□□□□ -2.08
FOXC1Q12948 RNA5SP200-201ENST00000516360 103 ntBASIC2.04□□□□□ -2.08
FOXC1Q12948 AC023827.1-201ENST00000569247 97 ntBASIC2.04□□□□□ -2.08
FOXC1Q12948 FO624990.1-201ENST00000636373 85 ntBASIC2.04□□□□□ -2.08
FOXC1Q12948 RNU6-35P-201ENST00000384530 107 ntBASIC2.03□□□□□ -2.08
FOXC1Q12948 MIR517B-201ENST00000385102 67 ntBASIC2.03□□□□□ -2.08
FOXC1Q12948 SNORD41.1-201ENST00000391000 69 ntBASIC2.03□□□□□ -2.08
FOXC1Q12948 AC079140.2-201ENST00000506193 142 ntBASIC2.03□□□□□ -2.08
FOXC1Q12948 AC019176.1-201ENST00000518519 225 ntBASIC2.03□□□□□ -2.08
FOXC1Q12948 AL512310.8-201ENST00000550183 120 ntBASIC2.03□□□□□ -2.08
FOXC1Q12948 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXC1Q12948 ZNF355P-201ENST00000427301 3216 ntBASIC2.02□□□□□ -2.09
FOXC1Q12948 SNORD33-201ENST00000362761 85 ntBASIC2.02□□□□□ -2.09
FOXC1Q12948 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
FOXC1Q12948 snoU13.9-201ENST00000458927 103 ntBASIC2.02□□□□□ -2.09
FOXC1Q12948 SNORD13-201ENST00000459299 104 ntBASIC2.02□□□□□ -2.09
FOXC1Q12948 Y_RNA.783-201ENST00000613546 102 ntBASIC2.02□□□□□ -2.09
FOXC1Q12948 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXC1Q12948 RNU7-74P-201ENST00000459104 62 ntBASIC2.01□□□□□ -2.09
FOXC1Q12948 Y_RNA.633-201ENST00000459107 95 ntBASIC2.01□□□□□ -2.09
FOXC1Q12948 RNU7-21P-201ENST00000459430 62 ntBASIC2.01□□□□□ -2.09
FOXC1Q12948 AL049779.4-201ENST00000604500 156 ntBASIC2.01□□□□□ -2.09
FOXC1Q12948 RNA5SP393-201ENST00000363423 117 ntBASIC2□□□□□ -2.09
FOXC1Q12948 RNA5SP190-201ENST00000365222 118 ntBASIC2□□□□□ -2.09
FOXC1Q12948 RNU6-1065P-201ENST00000384513 106 ntBASIC2□□□□□ -2.09
FOXC1Q12948 SNORA31.2-201ENST00000516019 134 ntBASIC2□□□□□ -2.09
FOXC1Q12948 RNU4ATAC4P-201ENST00000516307 126 ntBASIC2□□□□□ -2.09
FOXC1Q12948 RNA5SP480-201ENST00000516840 109 ntBASIC2□□□□□ -2.09
FOXC1Q12948 MIR21-201ENST00000362134 72 ntBASIC1.99□□□□□ -2.09
FOXC1Q12948 DEFA7P-201ENST00000382676 285 ntBASIC1.99□□□□□ -2.09
FOXC1Q12948 RNA5SP182-201ENST00000516064 82 ntBASIC1.99□□□□□ -2.09
FOXC1Q12948 SNORA25.15-201ENST00000516487 89 ntBASIC1.99□□□□□ -2.09
FOXC1Q12948 AL157834.3-201ENST00000615543 103 ntBASIC1.99□□□□□ -2.09
FOXC1Q12948 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXC1Q12948 MIR548C-201ENST00000384815 97 ntBASIC1.98□□□□□ -2.09
FOXC1Q12948 SUMO1P4-201ENST00000429430 302 ntBASIC1.98□□□□□ -2.09
FOXC1Q12948 BX248123.2-201ENST00000606318 124 ntBASIC1.98□□□□□ -2.09
FOXC1Q12948 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC1.98□□□□□ -2.09
FOXC1Q12948 SNORA41B-201ENST00000384785 128 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 RNU4-62P-201ENST00000410125 130 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 AL591704.2-201ENST00000421658 181 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 snoU13.13-201ENST00000458842 104 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 RNU7-119P-201ENST00000459279 63 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 MIR4460-201ENST00000577862 86 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 MIR3937-201ENST00000580135 106 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 MIR5194-201ENST00000582634 120 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 AL136317.1-201ENST00000612653 226 ntBASIC1.97□□□□□ -2.09
FOXC1Q12948 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXC1Q12948 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXC1Q12948 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.96□□□□□ -2.1
FOXC1Q12948 SNORD114-4-201ENST00000363962 75 ntBASIC1.96□□□□□ -2.1
FOXC1Q12948 MIR548F3-201ENST00000408509 87 ntBASIC1.96□□□□□ -2.1
FOXC1Q12948 AP1B1P2-201ENST00000416196 106 ntBASIC1.96□□□□□ -2.1
FOXC1Q12948 AC021146.9-201ENST00000512503 156 ntBASIC1.96□□□□□ -2.1
FOXC1Q12948 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC1.96□□□□□ -2.1
FOXC1Q12948 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXC1Q12948 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
FOXC1Q12948 RNA5SP325-201ENST00000363756 130 ntBASIC1.95□□□□□ -2.1
FOXC1Q12948 RNU1-141P-201ENST00000364623 158 ntBASIC1.95□□□□□ -2.1
FOXC1Q12948 RNU6-930P-201ENST00000390938 100 ntBASIC1.95□□□□□ -2.1
FOXC1Q12948 MIR934-201ENST00000401241 83 ntBASIC1.95□□□□□ -2.1
FOXC1Q12948 RNA5SP402-201ENST00000517148 110 ntBASIC1.95□□□□□ -2.1
FOXC1Q12948 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXC1Q12948 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXC1Q12948 RNU4-33P-201ENST00000364316 85 ntBASIC1.94□□□□□ -2.1
FOXC1Q12948 RNU6-42P-201ENST00000384165 107 ntBASIC1.94□□□□□ -2.1
FOXC1Q12948 MIR100-201ENST00000385259 80 ntBASIC1.94□□□□□ -2.1
FOXC1Q12948 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
FOXC1Q12948 RNA5SP181-201ENST00000410246 98 ntBASIC1.94□□□□□ -2.1
FOXC1Q12948 MIR4299-201ENST00000577899 72 ntBASIC1.94□□□□□ -2.1
FOXC1Q12948 MIR4639-201ENST00000584938 69 ntBASIC1.94□□□□□ -2.1
FOXC1Q12948 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
FOXC1Q12948 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
FOXC1Q12948 MIR1-1-201ENST00000362147 71 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 Y_RNA.125-201ENST00000363371 111 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 SNORA15B-2-201ENST00000384058 135 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 SNORA15B-1-201ENST00000384334 135 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 SNORA80D-201ENST00000384488 135 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 SNORD28-201ENST00000384706 75 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 213 ms