Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 U6.95-201ENST00000636931 70 ntBASIC0.08□□□□□ -2.4
CTCFP49711 MIR577-201ENST00000385196 96 ntBASIC0.07□□□□□ -2.4
CTCFP49711 RNU6-509P-201ENST00000363519 107 ntBASIC0.06□□□□□ -2.4
CTCFP49711 SNORD116-14-201ENST00000383894 92 ntBASIC0.06□□□□□ -2.4
CTCFP49711 SNORD116-17-201ENST00000383929 92 ntBASIC0.06□□□□□ -2.4
CTCFP49711 SNORD116-15-201ENST00000384445 92 ntBASIC0.06□□□□□ -2.4
CTCFP49711 SNORD116-19-201ENST00000384729 92 ntBASIC0.06□□□□□ -2.4
CTCFP49711 RNU6-243P-201ENST00000391140 107 ntBASIC0.06□□□□□ -2.4
CTCFP49711 RNA5SP484-201ENST00000458857 111 ntBASIC0.06□□□□□ -2.4
CTCFP49711 RNY1P9-201ENST00000532431 109 ntBASIC0.06□□□□□ -2.4
CTCFP49711 MIR4694-201ENST00000578534 80 ntBASIC0.06□□□□□ -2.4
CTCFP49711 MIR548AG2-201ENST00000581228 64 ntBASIC0.06□□□□□ -2.4
CTCFP49711 MIR643-201ENST00000385267 97 ntBASIC0.05□□□□□ -2.4
CTCFP49711 RNU7-74P-201ENST00000459104 62 ntBASIC0.05□□□□□ -2.4
CTCFP49711 AC068339.1-201ENST00000526965 141 ntBASIC0.05□□□□□ -2.4
CTCFP49711 NAMPTP3-201ENST00000569273 224 ntBASIC0.05□□□□□ -2.4
CTCFP49711 MIR548AD-201ENST00000584780 82 ntBASIC0.05□□□□□ -2.4
CTCFP49711 U7.6-201ENST00000610841 64 ntBASIC0.05□□□□□ -2.4
CTCFP49711 RNU6-1163P-201ENST00000364516 107 ntBASIC0.04□□□□□ -2.4
CTCFP49711 SNORD115-44-201ENST00000365391 82 ntBASIC0.04□□□□□ -2.4
CTCFP49711 Y_RNA.353-201ENST00000365440 108 ntBASIC0.04□□□□□ -2.4
CTCFP49711 MIR548A1-201ENST00000385041 97 ntBASIC0.04□□□□□ -2.4
CTCFP49711 MIR548H2-201ENST00000408874 88 ntBASIC0.04□□□□□ -2.4
CTCFP49711 HMGN2P22-201ENST00000427588 175 ntBASIC0.04□□□□□ -2.4
CTCFP49711 RNU6-782P-201ENST00000516852 104 ntBASIC0.04□□□□□ -2.4
CTCFP49711 TRDV1-202ENST00000621643 102 ntBASIC0.04□□□□□ -2.4
CTCFP49711 SNORD114-16-201ENST00000363044 70 ntBASIC0.03□□□□□ -2.4
CTCFP49711 MIR214-201ENST00000385214 110 ntBASIC0.03□□□□□ -2.4
CTCFP49711 MIR548A3-201ENST00000385297 97 ntBASIC0.03□□□□□ -2.4
CTCFP49711 AC006210.1-201ENST00000424882 111 ntBASIC0.03□□□□□ -2.4
CTCFP49711 AL161932.1-201ENST00000437408 146 ntBASIC0.03□□□□□ -2.4
CTCFP49711 MIR4667-201ENST00000578933 66 ntBASIC0.03□□□□□ -2.4
CTCFP49711 RNU6-832P-201ENST00000363319 107 ntBASIC0.02□□□□□ -2.41
CTCFP49711 U8.6-201ENST00000364939 135 ntBASIC0.02□□□□□ -2.41
CTCFP49711 RNU6-1184P-201ENST00000384588 108 ntBASIC0.02□□□□□ -2.41
CTCFP49711 SNORD110-201ENST00000408189 75 ntBASIC0.02□□□□□ -2.41
CTCFP49711 AC141557.1-201ENST00000540982 400 ntBASIC0.02□□□□□ -2.41
CTCFP49711 MIR4743-201ENST00000584576 69 ntBASIC0.02□□□□□ -2.41
CTCFP49711 AL670379.3-201ENST00000605040 251 ntBASIC0.02□□□□□ -2.41
CTCFP49711 RNY3P2-201ENST00000362918 102 ntBASIC0.01□□□□□ -2.41
CTCFP49711 RNU6-161P-201ENST00000363051 106 ntBASIC0.01□□□□□ -2.41
CTCFP49711 MIR617-201ENST00000385030 97 ntBASIC0.01□□□□□ -2.41
CTCFP49711 MIR519E-201ENST00000385075 84 ntBASIC0.01□□□□□ -2.41
CTCFP49711 MIR610-201ENST00000385139 96 ntBASIC0.01□□□□□ -2.41
CTCFP49711 MIR548AX-201ENST00000580117 73 ntBASIC0.01□□□□□ -2.41
CTCFP49711 MIR4290-201ENST00000583807 95 ntBASIC0.01□□□□□ -2.41
CTCFP49711 MIR4677-201ENST00000584153 80 ntBASIC0.01□□□□□ -2.41
CTCFP49711 U6.100-201ENST00000636230 99 ntBASIC0.01□□□□□ -2.41
CTCFP49711 SNORD114-5-201ENST00000362928 70 ntBASIC0□□□□□ -2.41
CTCFP49711 Y_RNA.78-201ENST00000362970 110 ntBASIC0□□□□□ -2.41
CTCFP49711 RNU6-957P-201ENST00000363652 99 ntBASIC0□□□□□ -2.41
CTCFP49711 RNU1-141P-201ENST00000364623 158 ntBASIC0□□□□□ -2.41
CTCFP49711 MIR224-201ENST00000384889 81 ntBASIC0□□□□□ -2.41
CTCFP49711 RNA5SP451-201ENST00000410588 110 ntBASIC0□□□□□ -2.41
CTCFP49711 AC093423.1-201ENST00000440817 142 ntBASIC0□□□□□ -2.41
CTCFP49711 MIR2113-201ENST00000459007 91 ntBASIC0□□□□□ -2.41
CTCFP49711 Y_RNA.660-201ENST00000516002 120 ntBASIC0□□□□□ -2.41
CTCFP49711 RNU6-1333P-201ENST00000516162 93 ntBASIC0□□□□□ -2.41
CTCFP49711 MIR5009-201ENST00000578736 100 ntBASIC0□□□□□ -2.41
CTCFP49711 MIR3613-201ENST00000579844 87 ntBASIC0□□□□□ -2.41
CTCFP49711 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.01□□□□□ -2.41
CTCFP49711 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.01□□□□□ -2.41
CTCFP49711 RNU6-959P-201ENST00000384671 107 ntBASIC-0.01□□□□□ -2.41
CTCFP49711 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.01□□□□□ -2.41
CTCFP49711 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.02□□□□□ -2.41
CTCFP49711 RNU6-480P-201ENST00000384332 107 ntBASIC-0.02□□□□□ -2.41
CTCFP49711 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.02□□□□□ -2.41
CTCFP49711 RNU6-287P-201ENST00000516230 98 ntBASIC-0.02□□□□□ -2.41
CTCFP49711 MIR3925-201ENST00000584674 77 ntBASIC-0.02□□□□□ -2.41
CTCFP49711 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.02□□□□□ -2.41
CTCFP49711 SNORD114-28-201ENST00000363610 72 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 RNU6-652P-201ENST00000365488 107 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 RNU6-81P-201ENST00000365608 104 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 MIR593-201ENST00000384856 100 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 MIR145-201ENST00000384967 88 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 MIR181B2-201ENST00000385004 89 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 MIR548M-201ENST00000408260 86 ntBASIC-0.03□□□□□ -2.41
CTCFP49711 RNU6-756P-201ENST00000383997 107 ntBASIC-0.04□□□□□ -2.42
CTCFP49711 SNORA51.5-201ENST00000384126 131 ntBASIC-0.04□□□□□ -2.42
CTCFP49711 MIR892B-201ENST00000401279 77 ntBASIC-0.04□□□□□ -2.42
CTCFP49711 AC109327.2-201ENST00000448339 378 ntBASIC-0.04□□□□□ -2.42
CTCFP49711 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.04□□□□□ -2.42
CTCFP49711 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.04□□□□□ -2.42
CTCFP49711 Y_RNA.261-201ENST00000364631 102 ntBASIC-0.05□□□□□ -2.42
CTCFP49711 RNU6-880P-201ENST00000384526 107 ntBASIC-0.05□□□□□ -2.42
CTCFP49711 RNU6-466P-201ENST00000391224 103 ntBASIC-0.05□□□□□ -2.42
CTCFP49711 SNORA25.13-201ENST00000516395 103 ntBASIC-0.05□□□□□ -2.42
CTCFP49711 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.06□□□□□ -2.42
CTCFP49711 TMSB4XP3-201ENST00000445144 114 ntBASIC-0.06□□□□□ -2.42
CTCFP49711 RNU6-86P-201ENST00000606534 107 ntBASIC-0.06□□□□□ -2.42
CTCFP49711 AC069503.3-201ENST00000618674 145 ntBASIC-0.06□□□□□ -2.42
CTCFP49711 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.07□□□□□ -2.42
CTCFP49711 SNORD116-21-201ENST00000384507 92 ntBASIC-0.07□□□□□ -2.42
CTCFP49711 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.07□□□□□ -2.42
CTCFP49711 AC025521.1-201ENST00000621624 286 ntBASIC-0.07□□□□□ -2.42
CTCFP49711 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.07□□□□□ -2.42
CTCFP49711 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
CTCFP49711 AC008267.6-201ENST00000441664 139 ntBASIC-0.08□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 208 ms