Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNA5SP89-201ENST00000410300 108 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 AC069271.1-201ENST00000445577 156 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 RNU6-75P-201ENST00000515944 104 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 RNA5SP227-201ENST00000516184 113 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 MIR4752-201ENST00000579672 72 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 MIR548AG2-201ENST00000581228 64 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 MIR3920-201ENST00000581751 86 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 U7.3-201ENST00000616123 62 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 SNORD118-201ENST00000363593 134 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 Y_RNA.283-201ENST00000364798 112 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 Y_RNA.290-201ENST00000364879 114 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 MIR488-201ENST00000365739 83 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 RNU6-32P-201ENST00000383948 107 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 RNU6-13P-201ENST00000384248 107 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 RNU6-12P-201ENST00000384604 107 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 RNU6-41P-201ENST00000384741 107 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 MIR193B-201ENST00000384907 83 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 RNU6-887P-201ENST00000410660 100 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.32□□□□□ -2.36
HOXC4P09017 SNORA68.3-201ENST00000515906 83 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 RNU6-168P-201ENST00000516189 101 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 RNU6-135P-201ENST00000516769 101 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 Y_RNA.705-201ENST00000516862 110 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.32□□□□□ -2.36
HOXC4P09017 MIR518A1-201ENST00000385068 85 ntBASIC0.31□□□□□ -2.36
HOXC4P09017 SNORA40.8-201ENST00000411034 126 ntBASIC0.31□□□□□ -2.36
HOXC4P09017 AC067863.3-201ENST00000624172 122 ntBASIC0.31□□□□□ -2.36
HOXC4P09017 MIR103A1-201ENST00000362165 78 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 SNORD41.1-201ENST00000391000 69 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 RNU6-269P-201ENST00000391077 97 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 RNU6-972P-201ENST00000391208 107 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 Y_RNA.648-201ENST00000459455 110 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 RNU6-287P-201ENST00000516230 98 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 AC026421.1-201ENST00000519101 163 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 MIR1273G-201ENST00000577677 100 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 RNU1-29P-201ENST00000606574 126 ntBASIC0.3□□□□□ -2.36
HOXC4P09017 MIRLET7F1-201ENST00000362202 87 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 SNORD44.1-201ENST00000363202 61 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 RNU6-132P-201ENST00000383863 107 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 RNY1P7-201ENST00000384743 110 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 MIR548L-201ENST00000408303 86 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.29□□□□□ -2.36
HOXC4P09017 SNORD4B-201ENST00000459083 72 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 SNORA40.13-201ENST00000516379 120 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 Y_RNA.677-201ENST00000516401 85 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 RNU7-13P-201ENST00000516413 62 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 RNU6-158P-201ENST00000517104 100 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 MIR4696-201ENST00000581431 70 ntBASIC0.29□□□□□ -2.36
HOXC4P09017 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 Y_RNA.207-201ENST00000364142 106 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 RNU6-1126P-201ENST00000384002 107 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 RNU6-466P-201ENST00000391224 103 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 RNU6-1232P-201ENST00000516299 86 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 MTRNR2L2-201ENST00000604882 87 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 SNORA70.25-201ENST00000612741 95 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 MALAT1.1-201ENST00000618249 95 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 MIR6755-201ENST00000619993 66 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 AL162376.1-201ENST00000624117 175 ntBASIC0.28□□□□□ -2.36
HOXC4P09017 MIRLET7D-201ENST00000362263 87 ntBASIC0.27□□□□□ -2.37
HOXC4P09017 RNU6-664P-201ENST00000362381 107 ntBASIC0.27□□□□□ -2.37
HOXC4P09017 Y_RNA.423-201ENST00000384057 113 ntBASIC0.27□□□□□ -2.37
HOXC4P09017 MIR519E-201ENST00000385075 84 ntBASIC0.27□□□□□ -2.37
HOXC4P09017 Y_RNA.596-201ENST00000410462 109 ntBASIC0.27□□□□□ -2.37
HOXC4P09017 Y_RNA.609-201ENST00000410669 89 ntBASIC0.27□□□□□ -2.37
HOXC4P09017 MIR2113-201ENST00000459007 91 ntBASIC0.27□□□□□ -2.37
HOXC4P09017 MIR4536-1-201ENST00000583537 88 ntBASIC0.27□□□□□ -2.37
HOXC4P09017 MIR330-201ENST00000362196 94 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 SNORD116-10-201ENST00000363791 102 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 SNORD101-201ENST00000384027 73 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 RNU6-49P-201ENST00000384256 107 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 MIR7-2-201ENST00000384970 110 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 RNA5SP292-201ENST00000390974 118 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 RNU2-59P-201ENST00000410482 191 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 RNU6-519P-201ENST00000410590 108 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 SNORD71-201ENST00000411292 86 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 RNA5SP484-201ENST00000458857 111 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 RNU6-65P-201ENST00000516332 98 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 RNA5SP134-201ENST00000516492 96 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 MIR924-201ENST00000638017 53 ntBASIC0.26□□□□□ -2.37
HOXC4P09017 Y_RNA.205-201ENST00000364128 113 ntBASIC0.25□□□□□ -2.37
HOXC4P09017 RNU6-1131P-201ENST00000364955 107 ntBASIC0.25□□□□□ -2.37
HOXC4P09017 SNORD90-201ENST00000391145 111 ntBASIC0.25□□□□□ -2.37
HOXC4P09017 RNU6-863P-201ENST00000515989 104 ntBASIC0.25□□□□□ -2.37
HOXC4P09017 NAMPTP3-201ENST00000569273 224 ntBASIC0.25□□□□□ -2.37
HOXC4P09017 MIR6779-201ENST00000617283 64 ntBASIC0.25□□□□□ -2.37
HOXC4P09017 MIR2052-201ENST00000636055 55 ntBASIC0.25□□□□□ -2.37
HOXC4P09017 Y_RNA.96-201ENST00000363092 109 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 RNU4-32P-201ENST00000363404 141 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 SNORD115-27-201ENST00000364430 82 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 SNORD115-44-201ENST00000365391 82 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 MIR617-201ENST00000385030 97 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 RNY4P30-201ENST00000410216 95 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 AC093423.1-201ENST00000440817 142 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 MIR3064-201ENST00000581130 66 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.24□□□□□ -2.37
HOXC4P09017 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.24□□□□□ -2.37
HOXC4P09017 RNU6-815P-201ENST00000384080 113 ntBASIC0.23□□□□□ -2.37
HOXC4P09017 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 174.6 ms