Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.79□□□□□ -2.28
CBX4O00257 MIR924-201ENST00000638017 53 ntBASIC0.79□□□□□ -2.28
CBX4O00257 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
CBX4O00257 SNORD115-44-201ENST00000365391 82 ntBASIC0.78□□□□□ -2.28
CBX4O00257 MIR146A-201ENST00000385201 99 ntBASIC0.78□□□□□ -2.28
CBX4O00257 Y_RNA.190-201ENST00000363964 101 ntBASIC0.77□□□□□ -2.29
CBX4O00257 MIR488-201ENST00000365739 83 ntBASIC0.77□□□□□ -2.29
CBX4O00257 MIR508-201ENST00000384857 115 ntBASIC0.77□□□□□ -2.29
CBX4O00257 Y_RNA.596-201ENST00000410462 109 ntBASIC0.77□□□□□ -2.29
CBX4O00257 SNORD71-201ENST00000411292 86 ntBASIC0.77□□□□□ -2.29
CBX4O00257 AL606490.4-201ENST00000423117 127 ntBASIC0.77□□□□□ -2.29
CBX4O00257 MIR6828-201ENST00000636181 60 ntBASIC0.77□□□□□ -2.29
CBX4O00257 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
CBX4O00257 SNORA36.1-201ENST00000363424 132 ntBASIC0.76□□□□□ -2.29
CBX4O00257 RNU6-716P-201ENST00000365621 103 ntBASIC0.76□□□□□ -2.29
CBX4O00257 Y_RNA.609-201ENST00000410669 89 ntBASIC0.76□□□□□ -2.29
CBX4O00257 MIR6513-201ENST00000621188 64 ntBASIC0.76□□□□□ -2.29
CBX4O00257 MIR6835-201ENST00000621552 64 ntBASIC0.76□□□□□ -2.29
CBX4O00257 SNORD114-23-201ENST00000363536 72 ntBASIC0.75□□□□□ -2.29
CBX4O00257 RNA5SP517-201ENST00000364724 117 ntBASIC0.75□□□□□ -2.29
CBX4O00257 RNU6-1131P-201ENST00000364955 107 ntBASIC0.75□□□□□ -2.29
CBX4O00257 SNORA8.2-201ENST00000384372 139 ntBASIC0.75□□□□□ -2.29
CBX4O00257 RNU7-85P-201ENST00000458851 63 ntBASIC0.75□□□□□ -2.29
CBX4O00257 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.75□□□□□ -2.29
CBX4O00257 U6.100-201ENST00000636230 99 ntBASIC0.75□□□□□ -2.29
CBX4O00257 AC010487.4-201ENST00000637027 61 ntBASIC0.75□□□□□ -2.29
CBX4O00257 SNORD101-201ENST00000384027 73 ntBASIC0.74□□□□□ -2.29
CBX4O00257 MIR936-201ENST00000401264 98 ntBASIC0.74□□□□□ -2.29
CBX4O00257 SNORD4B-201ENST00000459083 72 ntBASIC0.74□□□□□ -2.29
CBX4O00257 RNU7-74P-201ENST00000459104 62 ntBASIC0.74□□□□□ -2.29
CBX4O00257 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
CBX4O00257 RNU6-726P-201ENST00000364680 107 ntBASIC0.73□□□□□ -2.29
CBX4O00257 MIR548U-201ENST00000390728 81 ntBASIC0.73□□□□□ -2.29
CBX4O00257 SNORA40.8-201ENST00000411034 126 ntBASIC0.73□□□□□ -2.29
CBX4O00257 MIR3920-201ENST00000581751 86 ntBASIC0.73□□□□□ -2.29
CBX4O00257 AL109933.3-201ENST00000619095 188 ntBASIC0.73□□□□□ -2.29
CBX4O00257 RNY1P7-201ENST00000384743 110 ntBASIC0.72□□□□□ -2.29
CBX4O00257 SNORD41.1-201ENST00000391000 69 ntBASIC0.72□□□□□ -2.29
CBX4O00257 RNU6-75P-201ENST00000515944 104 ntBASIC0.72□□□□□ -2.29
CBX4O00257 RNA5SP395-201ENST00000516567 118 ntBASIC0.72□□□□□ -2.29
CBX4O00257 RNA5SP330-201ENST00000517096 96 ntBASIC0.72□□□□□ -2.29
CBX4O00257 RNA5SP170-201ENST00000517150 101 ntBASIC0.72□□□□□ -2.29
CBX4O00257 AC026421.1-201ENST00000519101 163 ntBASIC0.72□□□□□ -2.29
CBX4O00257 RNU6-664P-201ENST00000362381 107 ntBASIC0.71□□□□□ -2.3
CBX4O00257 RNA5SP257-201ENST00000363023 116 ntBASIC0.71□□□□□ -2.3
CBX4O00257 Y_RNA.239-201ENST00000364444 113 ntBASIC0.71□□□□□ -2.3
CBX4O00257 RNU6-945P-201ENST00000383947 107 ntBASIC0.71□□□□□ -2.3
CBX4O00257 SNORD116-22-201ENST00000384430 92 ntBASIC0.71□□□□□ -2.3
CBX4O00257 RNU6-1057P-201ENST00000517162 102 ntBASIC0.71□□□□□ -2.3
CBX4O00257 AC018659.1-201ENST00000551083 169 ntBASIC0.71□□□□□ -2.3
CBX4O00257 SNORA25.18-201ENST00000607153 114 ntBASIC0.71□□□□□ -2.3
CBX4O00257 MIR7107-201ENST00000611489 80 ntBASIC0.71□□□□□ -2.3
CBX4O00257 RNA5SP121-201ENST00000516537 101 ntBASIC0.7□□□□□ -2.3
CBX4O00257 MTRNR2L2-201ENST00000604882 87 ntBASIC0.7□□□□□ -2.3
CBX4O00257 RNA5SP62-201ENST00000363457 110 ntBASIC0.69□□□□□ -2.3
CBX4O00257 RNU6-1126P-201ENST00000384002 107 ntBASIC0.69□□□□□ -2.3
CBX4O00257 RNU6-811P-201ENST00000384069 107 ntBASIC0.69□□□□□ -2.3
CBX4O00257 MIR518A1-201ENST00000385068 85 ntBASIC0.69□□□□□ -2.3
CBX4O00257 RNA5SP193-201ENST00000410353 107 ntBASIC0.69□□□□□ -2.3
CBX4O00257 RNU6-844P-201ENST00000517175 102 ntBASIC0.69□□□□□ -2.3
CBX4O00257 MIR4696-201ENST00000581431 70 ntBASIC0.69□□□□□ -2.3
CBX4O00257 MIR8087-201ENST00000612745 78 ntBASIC0.69□□□□□ -2.3
CBX4O00257 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.69□□□□□ -2.3
CBX4O00257 SNORD118-201ENST00000363593 134 ntBASIC0.68□□□□□ -2.3
CBX4O00257 RNU6-49P-201ENST00000384256 107 ntBASIC0.68□□□□□ -2.3
CBX4O00257 AC098934.3-201ENST00000430450 190 ntBASIC0.68□□□□□ -2.3
CBX4O00257 RNU6-287P-201ENST00000516230 98 ntBASIC0.68□□□□□ -2.3
CBX4O00257 RN7SKP12-201ENST00000516275 143 ntBASIC0.68□□□□□ -2.3
CBX4O00257 MIR5582-201ENST00000579697 68 ntBASIC0.68□□□□□ -2.3
CBX4O00257 RNU4-32P-201ENST00000363404 141 ntBASIC0.67□□□□□ -2.3
CBX4O00257 Y_RNA.207-201ENST00000364142 106 ntBASIC0.67□□□□□ -2.3
CBX4O00257 RNU6-1134P-201ENST00000365156 101 ntBASIC0.67□□□□□ -2.3
CBX4O00257 MIR617-201ENST00000385030 97 ntBASIC0.67□□□□□ -2.3
CBX4O00257 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.67□□□□□ -2.3
CBX4O00257 RNU6-935P-201ENST00000410371 100 ntBASIC0.67□□□□□ -2.3
CBX4O00257 MIR2113-201ENST00000459007 91 ntBASIC0.67□□□□□ -2.3
CBX4O00257 RNU4-54P-201ENST00000516428 129 ntBASIC0.67□□□□□ -2.3
CBX4O00257 MIR4668-201ENST00000582284 70 ntBASIC0.67□□□□□ -2.3
CBX4O00257 MIRLET7F1-201ENST00000362202 87 ntBASIC0.66□□□□□ -2.3
CBX4O00257 RNU6-509P-201ENST00000363519 107 ntBASIC0.66□□□□□ -2.3
CBX4O00257 Y_RNA.258-201ENST00000364613 105 ntBASIC0.66□□□□□ -2.3
CBX4O00257 Y_RNA.369-201ENST00000365568 117 ntBASIC0.66□□□□□ -2.3
CBX4O00257 AC104996.3-201ENST00000590718 94 ntBASIC0.66□□□□□ -2.3
CBX4O00257 AL162376.1-201ENST00000624117 175 ntBASIC0.66□□□□□ -2.3
CBX4O00257 RNU6-1298P-201ENST00000362456 101 ntBASIC0.65□□□□□ -2.31
CBX4O00257 RNA5SP499-201ENST00000363982 119 ntBASIC0.65□□□□□ -2.31
CBX4O00257 MIR4711-201ENST00000578274 70 ntBASIC0.65□□□□□ -2.31
CBX4O00257 MIR3064-201ENST00000581130 66 ntBASIC0.65□□□□□ -2.31
CBX4O00257 MIR1236-201ENST00000408340 102 ntBASIC0.64□□□□□ -2.31
CBX4O00257 AC073869.9-201ENST00000641610 120 ntBASIC0.64□□□□□ -2.31
CBX4O00257 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
CBX4O00257 MIR330-201ENST00000362196 94 ntBASIC0.63□□□□□ -2.31
CBX4O00257 RNU6-132P-201ENST00000383863 107 ntBASIC0.63□□□□□ -2.31
CBX4O00257 Y_RNA.491-201ENST00000384417 107 ntBASIC0.63□□□□□ -2.31
CBX4O00257 MIR216B-201ENST00000390186 82 ntBASIC0.63□□□□□ -2.31
CBX4O00257 RNU6-269P-201ENST00000391077 97 ntBASIC0.63□□□□□ -2.31
CBX4O00257 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
CBX4O00257 RNA5SP476-201ENST00000516613 103 ntBASIC0.63□□□□□ -2.31
CBX4O00257 RNU6-229P-201ENST00000516614 102 ntBASIC0.63□□□□□ -2.31
CBX4O00257 MIR548AG2-201ENST00000581228 64 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 190.8 ms