Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.1□□□□□ -2.23
EBF3Q9H4W6 AL450471.1-201ENST00000447509 127 ntBASIC1.1□□□□□ -2.23
EBF3Q9H4W6 RNU7-195P-201ENST00000458793 62 ntBASIC1.1□□□□□ -2.23
EBF3Q9H4W6 SNORA70.22-201ENST00000517160 124 ntBASIC1.1□□□□□ -2.23
EBF3Q9H4W6 MIR4771-2-201ENST00000577758 74 ntBASIC1.1□□□□□ -2.23
EBF3Q9H4W6 MIR4771-1-201ENST00000582617 74 ntBASIC1.1□□□□□ -2.23
EBF3Q9H4W6 AC022709.1-201ENST00000615967 87 ntBASIC1.1□□□□□ -2.23
EBF3Q9H4W6 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
EBF3Q9H4W6 Y_RNA.536-201ENST00000384621 113 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 RNU6-243P-201ENST00000391140 107 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 SNORD90-201ENST00000391145 111 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 MIR1236-201ENST00000408340 102 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 MIR1257-201ENST00000408490 117 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 MIR548J-201ENST00000408833 112 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 RNU6-1194P-201ENST00000516208 104 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.09□□□□□ -2.23
EBF3Q9H4W6 SNORD114-21-201ENST00000606412 72 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 AC106800.4-201ENST00000614905 153 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 MIR6788-201ENST00000618842 66 ntBASIC1.09□□□□□ -2.23
EBF3Q9H4W6 RNU6-624P-201ENST00000363411 107 ntBASIC1.08□□□□□ -2.24
EBF3Q9H4W6 MIR125B2-201ENST00000385128 89 ntBASIC1.08□□□□□ -2.24
EBF3Q9H4W6 AC092628.1-201ENST00000436250 252 ntBASIC1.08□□□□□ -2.24
EBF3Q9H4W6 RNU7-90P-201ENST00000459216 62 ntBASIC1.08□□□□□ -2.24
EBF3Q9H4W6 AC019288.1-201ENST00000557918 224 ntBASIC1.08□□□□□ -2.24
EBF3Q9H4W6 MIR3064-201ENST00000581130 66 ntBASIC1.08□□□□□ -2.24
EBF3Q9H4W6 MIR4536-1-201ENST00000583537 88 ntBASIC1.08□□□□□ -2.24
EBF3Q9H4W6 MIR151B-201ENST00000584249 96 ntBASIC1.08□□□□□ -2.24
EBF3Q9H4W6 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.08□□□□□ -2.24
EBF3Q9H4W6 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.07□□□□□ -2.24
EBF3Q9H4W6 MIRLET7F1-201ENST00000362202 87 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 RNA5SP327-201ENST00000362494 101 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 SNORD115-37-201ENST00000363768 82 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 RNA5SP245-201ENST00000364239 121 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 SNORA25.8-201ENST00000364831 128 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 SNORA25-201ENST00000384384 134 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 MIR889-201ENST00000401280 79 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 SNORD111-201ENST00000408139 94 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 RPS26P5-201ENST00000418544 335 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 SNORA18.5-201ENST00000516616 101 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 RNU6-448P-201ENST00000517052 107 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 RNU6-1223P-201ENST00000517124 104 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 MIR4796-201ENST00000580742 81 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 MIR4676-201ENST00000583078 72 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 AC008608.1-201ENST00000603910 127 ntBASIC1.07□□□□□ -2.24
EBF3Q9H4W6 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.07□□□□□ -2.24
EBF3Q9H4W6 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
EBF3Q9H4W6 RNU6-811P-201ENST00000384069 107 ntBASIC1.06□□□□□ -2.24
EBF3Q9H4W6 MIR519A1-201ENST00000385257 85 ntBASIC1.06□□□□□ -2.24
EBF3Q9H4W6 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
EBF3Q9H4W6 Y_RNA.697-201ENST00000516776 113 ntBASIC1.06□□□□□ -2.24
EBF3Q9H4W6 RNU6-765P-201ENST00000516916 99 ntBASIC1.06□□□□□ -2.24
EBF3Q9H4W6 RNU7-156P-201ENST00000517214 74 ntBASIC1.06□□□□□ -2.24
EBF3Q9H4W6 MIR6515-201ENST00000619843 57 ntBASIC1.06□□□□□ -2.24
EBF3Q9H4W6 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
EBF3Q9H4W6 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
EBF3Q9H4W6 MIR101-2-201ENST00000362195 79 ntBASIC1.05□□□□□ -2.24
EBF3Q9H4W6 Y_RNA.56-201ENST00000362798 112 ntBASIC1.05□□□□□ -2.24
EBF3Q9H4W6 RNU6-1229P-201ENST00000364295 107 ntBASIC1.05□□□□□ -2.24
EBF3Q9H4W6 MIR635-201ENST00000384830 98 ntBASIC1.05□□□□□ -2.24
EBF3Q9H4W6 RNU6-65P-201ENST00000516332 98 ntBASIC1.05□□□□□ -2.24
EBF3Q9H4W6 SNORD92-201ENST00000585078 85 ntBASIC1.05□□□□□ -2.24
EBF3Q9H4W6 AC104996.3-201ENST00000590718 94 ntBASIC1.05□□□□□ -2.24
EBF3Q9H4W6 AC027335.2-201ENST00000624030 375 ntBASIC1.05□□□□□ -2.24
EBF3Q9H4W6 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
EBF3Q9H4W6 MIR373-201ENST00000362273 69 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 SNORA63.2-201ENST00000362603 126 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 RNU6-1260P-201ENST00000362944 107 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 RNU6-776P-201ENST00000364403 104 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 RNU6-1022P-201ENST00000365049 104 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 RNU6-291P-201ENST00000384720 107 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 RNU6-129P-201ENST00000391022 107 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 RNU6-466P-201ENST00000391224 103 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 AC002429.1-201ENST00000437672 148 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 MIR548H5-201ENST00000580314 60 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 MIR4804-201ENST00000581683 73 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 AC103810.9-201ENST00000606688 112 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 Y_RNA.788-201ENST00000622394 112 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 U6.100-201ENST00000636230 99 ntBASIC1.04□□□□□ -2.24
EBF3Q9H4W6 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.04□□□□□ -2.24
EBF3Q9H4W6 RNU4-38P-201ENST00000364472 129 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 Y_RNA.491-201ENST00000384417 107 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 Y_RNA.532-201ENST00000384590 113 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 MIR19B1-201ENST00000384829 87 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 RNU7-102P-201ENST00000458948 62 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 OR2A41P-201ENST00000473586 105 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 Y_RNA.809-201ENST00000516058 95 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 TRDV1-202ENST00000621643 102 ntBASIC1.03□□□□□ -2.24
EBF3Q9H4W6 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
EBF3Q9H4W6 MIRLET7A1-201ENST00000362295 80 ntBASIC1.02□□□□□ -2.25
EBF3Q9H4W6 RNU6-315P-201ENST00000362666 107 ntBASIC1.02□□□□□ -2.25
EBF3Q9H4W6 RNU6-161P-201ENST00000363051 106 ntBASIC1.02□□□□□ -2.25
EBF3Q9H4W6 RNU6-1296P-201ENST00000383879 107 ntBASIC1.02□□□□□ -2.25
EBF3Q9H4W6 MIR7-2-201ENST00000384970 110 ntBASIC1.02□□□□□ -2.25
EBF3Q9H4W6 MIR520H-201ENST00000385126 88 ntBASIC1.02□□□□□ -2.25
EBF3Q9H4W6 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
EBF3Q9H4W6 RNU7-56P-201ENST00000458744 62 ntBASIC1.02□□□□□ -2.25
EBF3Q9H4W6 RNU6-1108P-201ENST00000516308 104 ntBASIC1.02□□□□□ -2.25
EBF3Q9H4W6 MIR938-201ENST00000401216 83 ntBASIC1.01□□□□□ -2.25
EBF3Q9H4W6 snoU13.17-201ENST00000458802 104 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms