Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 uc_338.28-201ENST00000612082 187 ntBASIC0.28□□□□□ -2.36
CDX2Q99626 AC012531.4-201ENST00000616509 177 ntBASIC0.28□□□□□ -2.36
CDX2Q99626 MIR409-201ENST00000362237 79 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU6-1313P-201ENST00000362622 102 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 Y_RNA.98-201ENST00000363109 102 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNY4P6-201ENST00000363667 96 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU6-865P-201ENST00000364772 107 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU4-45P-201ENST00000365469 141 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU6-1014P-201ENST00000383940 103 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 Y_RNA.467-201ENST00000384297 102 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU6-1064P-201ENST00000410626 104 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU2-51P-201ENST00000410708 197 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 SNRPGP12-201ENST00000449481 213 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RPL39P34-201ENST00000477141 156 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU6-479P-201ENST00000516348 105 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU6-537P-201ENST00000517277 103 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 RNU7-161P-201ENST00000517289 62 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 MIR5009-201ENST00000578736 100 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 MIR4777-201ENST00000583710 86 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 AL670379.3-201ENST00000605040 251 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 AP001362.1-201ENST00000625165 124 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 AL512310.12-203ENST00000640543 90 ntBASIC0.27□□□□□ -2.37
CDX2Q99626 MIR103A1-201ENST00000362165 78 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 MIR450A1-201ENST00000362262 91 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU4-58P-201ENST00000363192 141 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-832P-201ENST00000363319 107 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNA5SP368-201ENST00000364298 116 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 Y_RNA.281-201ENST00000364774 94 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-1107P-201ENST00000364817 104 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-1325P-201ENST00000364905 105 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-44P-201ENST00000384045 107 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-409P-201ENST00000384114 104 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-106P-201ENST00000384405 107 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 SNORD28-201ENST00000384706 75 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 MIR590-201ENST00000385008 97 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 SNORD63B-201ENST00000411005 70 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 AC069271.1-201ENST00000445577 156 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 SPINT5P-201ENST00000448174 155 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 AC108740.1-201ENST00000498629 225 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-313P-201ENST00000516317 112 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-765P-201ENST00000516916 99 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 IGLVI-20-201ENST00000519296 130 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 MIR4679-2-201ENST00000578358 77 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 MIR548AG2-201ENST00000581228 64 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU6-86P-201ENST00000606534 107 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 RNU1-29P-201ENST00000606574 126 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 AL442128.1-201ENST00000615151 90 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 AC244669.1-204ENST00000621564 178 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 AC025521.1-201ENST00000621624 286 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 U6.95-201ENST00000636931 70 ntBASIC0.26□□□□□ -2.37
CDX2Q99626 SNORD115-24-201ENST00000363528 82 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 Y_RNA.173-201ENST00000363776 113 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 Y_RNA.291-201ENST00000364886 113 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 Y_RNA.323-201ENST00000365157 109 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 RNA5SP117-201ENST00000365294 118 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 Y_RNA.567-201ENST00000384736 106 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 MIR181B2-201ENST00000385004 89 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 MIR548I2-201ENST00000408348 149 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 MIR548G-201ENST00000408442 89 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 snoU13.11-201ENST00000459219 104 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 RNA5SP134-201ENST00000516492 96 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 RNU6-62P-201ENST00000516526 102 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 RNA5SP47-201ENST00000517230 109 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 AC141557.1-201ENST00000540982 400 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 MIR4493-201ENST00000584016 73 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 MIR7107-201ENST00000611489 80 ntBASIC0.25□□□□□ -2.37
CDX2Q99626 Y_RNA.56-201ENST00000362798 112 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 SNORD36A-201ENST00000362874 73 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 RNU6-957P-201ENST00000363652 99 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 RNU6-215P-201ENST00000365169 102 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 RNU6-524P-201ENST00000384270 107 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 SNORA8.2-201ENST00000384372 139 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 RNU6-880P-201ENST00000384526 107 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 Y_RNA.709-201ENST00000516952 92 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 RNU6-789P-201ENST00000517105 102 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 MTND5P40-201ENST00000559945 246 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 MIR6755-201ENST00000619993 66 ntBASIC0.24□□□□□ -2.37
CDX2Q99626 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.24□□□□□ -2.37
CDX2Q99626 AC090625.1-201ENST00000357130 210 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 MIR101-2-201ENST00000362195 79 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNU6-170P-201ENST00000362832 104 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNY3P2-201ENST00000362918 102 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 SNORD44.1-201ENST00000363202 61 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNA5SP403-201ENST00000363598 108 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNU6-1244P-201ENST00000363614 108 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 Y_RNA.163-201ENST00000363702 113 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 Y_RNA.507-201ENST00000384500 99 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 MIR599-201ENST00000385069 95 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNU6-644P-201ENST00000391155 98 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 AC244505.6-201ENST00000452829 130 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNU7-104P-201ENST00000459398 79 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNU6-863P-201ENST00000515989 104 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 Y_RNA.659-201ENST00000515994 113 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNU6-904P-201ENST00000516206 101 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNU6-162P-201ENST00000516228 103 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 RNA5SP268-201ENST00000516828 124 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 SNORA70.25-201ENST00000612741 95 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 U6.100-201ENST00000636230 99 ntBASIC0.23□□□□□ -2.37
CDX2Q99626 SNORD118-201ENST00000363593 134 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms