Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 MIR548J-201ENST00000408833 112 ntBASIC0.77□□□□□ -2.29
PKP4Q99569 SNORD36A-201ENST00000362874 73 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 RNU6-1335P-201ENST00000365426 107 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 RNU6-49P-201ENST00000384256 107 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 RNY1P7-201ENST00000384743 110 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 RNU7-106P-201ENST00000459514 67 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 AC002350.1-201ENST00000490759 375 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 RNU6-844P-201ENST00000517175 102 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 MIR7111-201ENST00000619751 72 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 uc_338.16-201ENST00000621804 95 ntBASIC0.76□□□□□ -2.29
PKP4Q99569 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
PKP4Q99569 Y_RNA.190-201ENST00000363964 101 ntBASIC0.75□□□□□ -2.29
PKP4Q99569 RNA5SP245-201ENST00000364239 121 ntBASIC0.75□□□□□ -2.29
PKP4Q99569 RNA5SP117-201ENST00000365294 118 ntBASIC0.75□□□□□ -2.29
PKP4Q99569 MIR573-201ENST00000384964 99 ntBASIC0.75□□□□□ -2.29
PKP4Q99569 AL606490.4-201ENST00000423117 127 ntBASIC0.75□□□□□ -2.29
PKP4Q99569 AC097635.1-201ENST00000450678 155 ntBASIC0.75□□□□□ -2.29
PKP4Q99569 RNU7-195P-201ENST00000458793 62 ntBASIC0.75□□□□□ -2.29
PKP4Q99569 Y_RNA.32-201ENST00000362589 110 ntBASIC0.74□□□□□ -2.29
PKP4Q99569 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
PKP4Q99569 Y_RNA.648-201ENST00000459455 110 ntBASIC0.74□□□□□ -2.29
PKP4Q99569 Y_RNA.809-201ENST00000516058 95 ntBASIC0.74□□□□□ -2.29
PKP4Q99569 SNORA31.14-201ENST00000516728 116 ntBASIC0.74□□□□□ -2.29
PKP4Q99569 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.74□□□□□ -2.29
PKP4Q99569 RNU6-1260P-201ENST00000362944 107 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 RNU6-294P-201ENST00000364999 102 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 MIR489-201ENST00000384923 84 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 MIR599-201ENST00000385069 95 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 SNORD99-201ENST00000408612 74 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 AC244505.6-201ENST00000452829 130 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 AC026421.1-201ENST00000519101 163 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 CYP3A137P-201ENST00000562436 69 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 AC006254.2-201ENST00000603259 279 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 MIR6866-201ENST00000638146 69 ntBASIC0.73□□□□□ -2.29
PKP4Q99569 RNU6-135P-201ENST00000516769 101 ntBASIC0.72□□□□□ -2.29
PKP4Q99569 AC022709.1-201ENST00000615967 87 ntBASIC0.72□□□□□ -2.29
PKP4Q99569 SNORD116-22-201ENST00000384430 92 ntBASIC0.71□□□□□ -2.3
PKP4Q99569 RNU6-466P-201ENST00000391224 103 ntBASIC0.71□□□□□ -2.3
PKP4Q99569 RNU6-469P-201ENST00000516253 101 ntBASIC0.71□□□□□ -2.3
PKP4Q99569 MIR5000-201ENST00000577717 103 ntBASIC0.71□□□□□ -2.3
PKP4Q99569 AC011195.1-201ENST00000578177 177 ntBASIC0.71□□□□□ -2.3
PKP4Q99569 MIR3612-201ENST00000579753 87 ntBASIC0.71□□□□□ -2.3
PKP4Q99569 MIR6515-201ENST00000619843 57 ntBASIC0.71□□□□□ -2.3
PKP4Q99569 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.71□□□□□ -2.3
PKP4Q99569 RNU6-1134P-201ENST00000365156 101 ntBASIC0.7□□□□□ -2.3
PKP4Q99569 Y_RNA.558-201ENST00000384685 113 ntBASIC0.7□□□□□ -2.3
PKP4Q99569 RNU6-519P-201ENST00000410590 108 ntBASIC0.7□□□□□ -2.3
PKP4Q99569 Y_RNA.609-201ENST00000410669 89 ntBASIC0.7□□□□□ -2.3
PKP4Q99569 AL161932.1-201ENST00000437408 146 ntBASIC0.7□□□□□ -2.3
PKP4Q99569 snoU13.11-201ENST00000459219 104 ntBASIC0.7□□□□□ -2.3
PKP4Q99569 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.7□□□□□ -2.3
PKP4Q99569 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.7□□□□□ -2.3
PKP4Q99569 Y_RNA.283-201ENST00000364798 112 ntBASIC0.69□□□□□ -2.3
PKP4Q99569 RNU4-45P-201ENST00000365469 141 ntBASIC0.69□□□□□ -2.3
PKP4Q99569 RNU6-524P-201ENST00000384270 107 ntBASIC0.69□□□□□ -2.3
PKP4Q99569 MIR644A-201ENST00000385262 94 ntBASIC0.69□□□□□ -2.3
PKP4Q99569 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
PKP4Q99569 AC244098.3-201ENST00000424803 96 ntBASIC0.69□□□□□ -2.3
PKP4Q99569 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.69□□□□□ -2.3
PKP4Q99569 MIR6835-201ENST00000621552 64 ntBASIC0.69□□□□□ -2.3
PKP4Q99569 SNORD115-24-201ENST00000363528 82 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 RNU6-957P-201ENST00000363652 99 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 Y_RNA.221-201ENST00000364248 96 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 RNU7-85P-201ENST00000458851 63 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 SNORD4B-201ENST00000459083 72 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 RNU6-65P-201ENST00000516332 98 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 MIR4668-201ENST00000582284 70 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.68□□□□□ -2.3
PKP4Q99569 TRDV1-202ENST00000621643 102 ntBASIC0.68□□□□□ -2.3
PKP4Q99569 Y_RNA.17-201ENST00000362433 111 ntBASIC0.67□□□□□ -2.3
PKP4Q99569 RNY1P4-201ENST00000384595 115 ntBASIC0.67□□□□□ -2.3
PKP4Q99569 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.67□□□□□ -2.3
PKP4Q99569 MIR3678-201ENST00000578455 94 ntBASIC0.67□□□□□ -2.3
PKP4Q99569 MIR4536-1-201ENST00000583537 88 ntBASIC0.67□□□□□ -2.3
PKP4Q99569 MIR4639-201ENST00000584938 69 ntBASIC0.67□□□□□ -2.3
PKP4Q99569 MIR18A-201ENST00000362310 71 ntBASIC0.66□□□□□ -2.3
PKP4Q99569 RNU6-1229P-201ENST00000364295 107 ntBASIC0.66□□□□□ -2.3
PKP4Q99569 MIR598-201ENST00000384868 97 ntBASIC0.66□□□□□ -2.3
PKP4Q99569 RNU6-1265P-201ENST00000516342 103 ntBASIC0.66□□□□□ -2.3
PKP4Q99569 RNA5SP403-201ENST00000363598 108 ntBASIC0.65□□□□□ -2.31
PKP4Q99569 SNORD18A-201ENST00000363753 72 ntBASIC0.65□□□□□ -2.31
PKP4Q99569 SNORD28-201ENST00000384706 75 ntBASIC0.65□□□□□ -2.31
PKP4Q99569 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
PKP4Q99569 RNU6-402P-201ENST00000410678 103 ntBASIC0.65□□□□□ -2.31
PKP4Q99569 Y_RNA.620-201ENST00000411009 88 ntBASIC0.65□□□□□ -2.31
PKP4Q99569 RNU6-75P-201ENST00000515944 104 ntBASIC0.65□□□□□ -2.31
PKP4Q99569 RNU6-219P-201ENST00000364728 107 ntBASIC0.64□□□□□ -2.31
PKP4Q99569 RNU6-675P-201ENST00000384236 104 ntBASIC0.64□□□□□ -2.31
PKP4Q99569 MIR450A2-201ENST00000385022 100 ntBASIC0.64□□□□□ -2.31
PKP4Q99569 Y_RNA.593-201ENST00000410292 98 ntBASIC0.64□□□□□ -2.31
PKP4Q99569 RNA5SP222-201ENST00000411039 105 ntBASIC0.64□□□□□ -2.31
PKP4Q99569 RNU7-161P-201ENST00000517289 62 ntBASIC0.64□□□□□ -2.31
PKP4Q99569 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.64□□□□□ -2.31
PKP4Q99569 AL590095.2-201ENST00000604136 117 ntBASIC0.64□□□□□ -2.31
PKP4Q99569 AC244669.1-204ENST00000621564 178 ntBASIC0.64□□□□□ -2.31
PKP4Q99569 RNU6-633P-201ENST00000362612 103 ntBASIC0.63□□□□□ -2.31
PKP4Q99569 Y_RNA.596-201ENST00000410462 109 ntBASIC0.63□□□□□ -2.31
PKP4Q99569 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms