Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 Y_RNA.441-201ENST00000384123 112 ntBASIC-0.67□□□□□ -2.52
CCDC40Q4G0X9 RNU6-154P-201ENST00000384306 106 ntBASIC-0.67□□□□□ -2.52
CCDC40Q4G0X9 SNORD75.1-201ENST00000408373 60 ntBASIC-0.67□□□□□ -2.52
CCDC40Q4G0X9 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.67□□□□□ -2.52
CCDC40Q4G0X9 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-0.67□□□□□ -2.52
CCDC40Q4G0X9 MIR548AE1-201ENST00000583292 70 ntBASIC-0.67□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.68□□□□□ -2.52
CCDC40Q4G0X9 MIR539-201ENST00000365690 78 ntBASIC-0.68□□□□□ -2.52
CCDC40Q4G0X9 RNA5SP451-201ENST00000410588 110 ntBASIC-0.68□□□□□ -2.52
CCDC40Q4G0X9 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.68□□□□□ -2.52
CCDC40Q4G0X9 MIR20A-201ENST00000362279 71 ntBASIC-0.69□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.69□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.401-201ENST00000383965 117 ntBASIC-0.69□□□□□ -2.52
CCDC40Q4G0X9 RNA5SP136-201ENST00000410906 107 ntBASIC-0.69□□□□□ -2.52
CCDC40Q4G0X9 AC007012.1-201ENST00000567192 175 ntBASIC-0.69□□□□□ -2.52
CCDC40Q4G0X9 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.69□□□□□ -2.52
CCDC40Q4G0X9 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.69□□□□□ -2.52
CCDC40Q4G0X9 SNORD114-11-201ENST00000363738 75 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.274-201ENST00000364714 101 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 MIR604-201ENST00000384880 94 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 MIR216B-201ENST00000390186 82 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 SPINT5P-201ENST00000448174 155 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 RNU7-197P-201ENST00000458836 62 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 RNU6-1045P-201ENST00000516321 107 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 RNU6-1006P-201ENST00000516998 103 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 IGKV1-22-201ENST00000524313 326 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 AP002392.1-201ENST00000537692 208 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 RNU6-90P-201ENST00000606352 106 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 MIR1255B1-201ENST00000636325 63 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 AL512310.12-203ENST00000640543 90 ntBASIC-0.7□□□□□ -2.52
CCDC40Q4G0X9 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 SNORD38.1-201ENST00000363863 68 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.297-201ENST00000364950 91 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 RNU6-284P-201ENST00000411105 106 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 AC244090.1-201ENST00000441884 93 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 RNA5SP66-201ENST00000517178 101 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 MIR4503-201ENST00000582187 83 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 U6.100-201ENST00000636230 99 ntBASIC-0.71□□□□□ -2.52
CCDC40Q4G0X9 RNU6-363P-201ENST00000362895 105 ntBASIC-0.72□□□□□ -2.52
CCDC40Q4G0X9 RNU6-647P-201ENST00000364243 107 ntBASIC-0.72□□□□□ -2.52
CCDC40Q4G0X9 RNU4-11P-201ENST00000365287 132 ntBASIC-0.72□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.72□□□□□ -2.52
CCDC40Q4G0X9 RNU6-455P-201ENST00000384681 107 ntBASIC-0.72□□□□□ -2.52
CCDC40Q4G0X9 MIR548G-201ENST00000408442 89 ntBASIC-0.72□□□□□ -2.52
CCDC40Q4G0X9 SNORA7.5-201ENST00000410672 110 ntBASIC-0.72□□□□□ -2.52
CCDC40Q4G0X9 RN7SKP19-201ENST00000516016 252 ntBASIC-0.72□□□□□ -2.52
CCDC40Q4G0X9 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.272-201ENST00000364696 102 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 RNU6-915P-201ENST00000364943 103 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 RNU6-196P-201ENST00000384315 107 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.489-201ENST00000384410 101 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 RNU6-35P-201ENST00000384530 107 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 AL161932.1-201ENST00000437408 146 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 AC096720.1-201ENST00000604441 183 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 AC141273.2-201ENST00000618989 130 ntBASIC-0.73□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.74□□□□□ -2.53
CCDC40Q4G0X9 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.74□□□□□ -2.53
CCDC40Q4G0X9 RNU6-480P-201ENST00000384332 107 ntBASIC-0.74□□□□□ -2.53
CCDC40Q4G0X9 AC114755.3-201ENST00000481111 251 ntBASIC-0.74□□□□□ -2.53
CCDC40Q4G0X9 RNU6-758P-201ENST00000516292 89 ntBASIC-0.74□□□□□ -2.53
CCDC40Q4G0X9 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 RNU6-957P-201ENST00000363652 99 ntBASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 RNU6-694P-201ENST00000364071 147 ntBASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 MIR548D2-201ENST00000384955 97 ntBASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 RNU6-460P-201ENST00000391158 108 ntBASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 MTND3P2-201ENST00000438452 342 ntBASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 RNU7-120P-201ENST00000459334 63 ntBASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 MIR4432-201ENST00000581823 84 ntBASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 AP001340.1-201ENST00000624405 217 ntBASIC-0.75□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.162-201ENST00000363683 102 ntBASIC-0.76□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.76□□□□□ -2.53
CCDC40Q4G0X9 RNU6-900P-201ENST00000384498 102 ntBASIC-0.76□□□□□ -2.53
CCDC40Q4G0X9 MIR652-201ENST00000385278 98 ntBASIC-0.76□□□□□ -2.53
CCDC40Q4G0X9 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.76□□□□□ -2.53
CCDC40Q4G0X9 MIR3681-201ENST00000580089 72 ntBASIC-0.76□□□□□ -2.53
CCDC40Q4G0X9 AC108676.2-201ENST00000605225 163 ntBASIC-0.76□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.76□□□□□ -2.53
CCDC40Q4G0X9 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.77□□□□□ -2.53
CCDC40Q4G0X9 MIR9-2-201ENST00000384838 87 ntBASIC-0.77□□□□□ -2.53
CCDC40Q4G0X9 MIR1263-201ENST00000408324 86 ntBASIC-0.77□□□□□ -2.53
CCDC40Q4G0X9 MIR1265-201ENST00000408444 86 ntBASIC-0.77□□□□□ -2.53
CCDC40Q4G0X9 RNU6-861P-201ENST00000516745 106 ntBASIC-0.77□□□□□ -2.53
CCDC40Q4G0X9 AL391099.1-201ENST00000624635 187 ntBASIC-0.77□□□□□ -2.53
CCDC40Q4G0X9 RNU6-151P-201ENST00000364158 107 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 SNORD101-201ENST00000384027 73 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 RNU6-409P-201ENST00000384114 104 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 RNU6-466P-201ENST00000391224 103 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 MIR513C-201ENST00000401352 84 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 Z95118.1-201ENST00000421372 247 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 SNORA81.3-201ENST00000517283 198 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 AP001328.1-201ENST00000528550 176 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 MIR548O2-201ENST00000616090 70 ntBASIC-0.78□□□□□ -2.53
CCDC40Q4G0X9 AC093726.3-201ENST00000637588 150 ntBASIC-0.78□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 222.6 ms