Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 MIR3646-201ENST00000578301 84 ntBASIC-0.98□□□□□ -2.57
ZNF404Q494X3 MIR548AX-201ENST00000580117 73 ntBASIC-0.98□□□□□ -2.57
ZNF404Q494X3 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.98□□□□□ -2.57
ZNF404Q494X3 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 RNU6-309P-201ENST00000364573 106 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 SNORD18B-201ENST00000365659 72 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 snoU13.19-201ENST00000459148 104 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 HAR1A.1-201ENST00000459583 118 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 RNU7-6P-201ENST00000516845 62 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 IGKV1-22-201ENST00000524313 326 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 AC020661.2-201ENST00000560114 134 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 MIR4696-201ENST00000581431 70 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 MIR6844-201ENST00000637122 62 ntBASIC-0.99□□□□□ -2.57
ZNF404Q494X3 RNU6-235P-201ENST00000362644 107 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 Y_RNA.78-201ENST00000362970 110 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 Y_RNA.202-201ENST00000364083 110 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 SNORD101-201ENST00000384027 73 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1□□□□□ -2.57
ZNF404Q494X3 RNU6-588P-201ENST00000410281 105 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 SPINT5P-201ENST00000448174 155 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 AC107027.2-201ENST00000512197 115 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 RNU6-635P-201ENST00000516651 102 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 RNU6-1006P-201ENST00000516998 103 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 RNU6-1057P-201ENST00000517162 102 ntBASIC-1□□□□□ -2.57
ZNF404Q494X3 RNU6-664P-201ENST00000362381 107 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 RNU6-476P-201ENST00000384726 107 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 MIR548E-201ENST00000408287 88 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 Y_RNA.626-201ENST00000411288 95 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-1.01□□□□□ -2.57
ZNF404Q494X3 SCARNA17-201ENST00000516183 144 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 SNORD22.1-201ENST00000516331 125 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 Y_RNA.690-201ENST00000516603 95 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 MIR4801-201ENST00000582704 82 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 AC108081.1-201ENST00000604358 221 ntBASIC-1.01□□□□□ -2.57
ZNF404Q494X3 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.02□□□□□ -2.57
ZNF404Q494X3 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.02□□□□□ -2.57
ZNF404Q494X3 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.02□□□□□ -2.57
ZNF404Q494X3 SNORD74.6-201ENST00000364796 70 ntBASIC-1.02□□□□□ -2.57
ZNF404Q494X3 MIR582-201ENST00000365731 98 ntBASIC-1.02□□□□□ -2.57
ZNF404Q494X3 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.02□□□□□ -2.57
ZNF404Q494X3 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.02□□□□□ -2.57
ZNF404Q494X3 RNU6-238P-201ENST00000363313 106 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 SNORD114-4-201ENST00000363962 75 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 SNORA33.2-201ENST00000365413 134 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 RNU6-639P-201ENST00000384074 107 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 Y_RNA.435-201ENST00000384095 112 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 MT-TI-201ENST00000387365 69 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 SNORD58.1-201ENST00000391313 66 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 MIR548G-201ENST00000408442 89 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 MIR548H3-201ENST00000408771 118 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 RNU6-935P-201ENST00000410371 100 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 AL500527.2-201ENST00000454105 95 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 MIR3163-201ENST00000581592 73 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 MIR5704-201ENST00000584029 77 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 RNU6-90P-201ENST00000606352 106 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 MIR6854-201ENST00000614935 69 ntBASIC-1.03□□□□□ -2.57
ZNF404Q494X3 RNU6-1313P-201ENST00000362622 102 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 SNORD114-25-201ENST00000363742 72 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 RNU6-312P-201ENST00000364629 107 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 RNU6-466P-201ENST00000391224 103 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 AC022137.1-201ENST00000483735 151 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.04□□□□□ -2.58
ZNF404Q494X3 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 MIR1255B1-201ENST00000636325 63 ntBASIC-1.04□□□□□ -2.58
ZNF404Q494X3 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 Y_RNA.83-201ENST00000363005 113 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 RNY1P11-201ENST00000363759 113 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 SNORD38.1-201ENST00000363863 68 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 RNU6-54P-201ENST00000365563 107 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 RNU6-918P-201ENST00000391219 106 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 U3.27-201ENST00000391237 200 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 MTATP6P23-201ENST00000440153 476 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 Y_RNA.686-201ENST00000516548 134 ntBASIC-1.05□□□□□ -2.58
ZNF404Q494X3 MIR517B-201ENST00000385102 67 ntBASIC-1.06□□□□□ -2.58
ZNF404Q494X3 MTND2P23-201ENST00000422990 651 ntBASIC-1.06□□□□□ -2.58
ZNF404Q494X3 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.06□□□□□ -2.58
ZNF404Q494X3 AC097510.1-201ENST00000510945 133 ntBASIC-1.06□□□□□ -2.58
ZNF404Q494X3 AC021753.1-201ENST00000635724 168 ntBASIC-1.06□□□□□ -2.58
ZNF404Q494X3 RNU6-30P-201ENST00000384561 107 ntBASIC-1.07□□□□□ -2.58
ZNF404Q494X3 AP000533.3-201ENST00000447704 118 ntBASIC-1.07□□□□□ -2.58
ZNF404Q494X3 MTATP8P1-201ENST00000467115 207 ntBASIC-1.07□□□□□ -2.58
ZNF404Q494X3 AP002392.1-201ENST00000537692 208 ntBASIC-1.07□□□□□ -2.58
ZNF404Q494X3 uc_338.19-201ENST00000616808 99 ntBASIC-1.07□□□□□ -2.58
ZNF404Q494X3 MIR8068-201ENST00000618032 68 ntBASIC-1.07□□□□□ -2.58
ZNF404Q494X3 AL512310.12-203ENST00000640543 90 ntBASIC-1.07□□□□□ -2.58
ZNF404Q494X3 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.08□□□□□ -2.58
ZNF404Q494X3 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.08□□□□□ -2.58
ZNF404Q494X3 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.08□□□□□ -2.58
ZNF404Q494X3 SNORA7.5-201ENST00000410672 110 ntBASIC-1.08□□□□□ -2.58
ZNF404Q494X3 RNU2-38P-201ENST00000410856 79 ntBASIC-1.08□□□□□ -2.58
ZNF404Q494X3 RNU5E-3P-201ENST00000515913 68 ntBASIC-1.08□□□□□ -2.58
ZNF404Q494X3 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.08□□□□□ -2.58
ZNF404Q494X3 RNU6-762P-201ENST00000517107 102 ntBASIC-1.08□□□□□ -2.58
ZNF404Q494X3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.08□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms