Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.75□□□□□ -2.29
CIITAP33076 AC244505.6-201ENST00000452829 130 ntBASIC0.75□□□□□ -2.29
CIITAP33076 AC138907.6-201ENST00000568401 126 ntBASIC0.75□□□□□ -2.29
CIITAP33076 MIR4714-201ENST00000580728 77 ntBASIC0.75□□□□□ -2.29
CIITAP33076 Y_RNA.10-201ENST00000362371 110 ntBASIC0.74□□□□□ -2.29
CIITAP33076 Y_RNA.68-201ENST00000362881 102 ntBASIC0.74□□□□□ -2.29
CIITAP33076 SNORD45B-201ENST00000364617 72 ntBASIC0.74□□□□□ -2.29
CIITAP33076 RNU6-1113P-201ENST00000384348 107 ntBASIC0.74□□□□□ -2.29
CIITAP33076 MIR3678-201ENST00000578455 94 ntBASIC0.74□□□□□ -2.29
CIITAP33076 MIR4439-201ENST00000583746 80 ntBASIC0.74□□□□□ -2.29
CIITAP33076 Y_RNA.818-201ENST00000618813 71 ntBASIC0.74□□□□□ -2.29
CIITAP33076 SNORD36A-201ENST00000362874 73 ntBASIC0.73□□□□□ -2.29
CIITAP33076 Y_RNA.174-201ENST00000363781 105 ntBASIC0.73□□□□□ -2.29
CIITAP33076 RNA5SP117-201ENST00000365294 118 ntBASIC0.73□□□□□ -2.29
CIITAP33076 MIR181B2-201ENST00000385004 89 ntBASIC0.73□□□□□ -2.29
CIITAP33076 RNU7-195P-201ENST00000458793 62 ntBASIC0.73□□□□□ -2.29
CIITAP33076 Y_RNA.115-201ENST00000363272 98 ntBASIC0.72□□□□□ -2.29
CIITAP33076 SNORD18A-201ENST00000363753 72 ntBASIC0.72□□□□□ -2.29
CIITAP33076 RNA5SP222-201ENST00000411039 105 ntBASIC0.72□□□□□ -2.29
CIITAP33076 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.72□□□□□ -2.29
CIITAP33076 AC138869.1-201ENST00000568623 124 ntBASIC0.72□□□□□ -2.29
CIITAP33076 AP001318.4-201ENST00000616637 121 ntBASIC0.72□□□□□ -2.29
CIITAP33076 Y_RNA.681-201ENST00000516445 113 ntBASIC0.71□□□□□ -2.3
CIITAP33076 RNU7-10P-201ENST00000607194 63 ntBASIC0.71□□□□□ -2.3
CIITAP33076 Y_RNA.57-201ENST00000362806 113 ntBASIC0.7□□□□□ -2.3
CIITAP33076 Y_RNA.93-201ENST00000363066 109 ntBASIC0.7□□□□□ -2.3
CIITAP33076 SNORA36.1-201ENST00000363424 132 ntBASIC0.7□□□□□ -2.3
CIITAP33076 Y_RNA.348-201ENST00000365403 103 ntBASIC0.7□□□□□ -2.3
CIITAP33076 RNU6-813P-201ENST00000384691 107 ntBASIC0.7□□□□□ -2.3
CIITAP33076 RNU6-644P-201ENST00000391155 98 ntBASIC0.7□□□□□ -2.3
CIITAP33076 AC025521.1-201ENST00000621624 286 ntBASIC0.7□□□□□ -2.3
CIITAP33076 RNU6-1260P-201ENST00000362944 107 ntBASIC0.69□□□□□ -2.3
CIITAP33076 Y_RNA.495-201ENST00000384435 112 ntBASIC0.69□□□□□ -2.3
CIITAP33076 SNORD28-201ENST00000384706 75 ntBASIC0.69□□□□□ -2.3
CIITAP33076 MIR599-201ENST00000385069 95 ntBASIC0.69□□□□□ -2.3
CIITAP33076 MTATP8P2-201ENST00000435212 202 ntBASIC0.69□□□□□ -2.3
CIITAP33076 AC097635.1-201ENST00000450678 155 ntBASIC0.69□□□□□ -2.3
CIITAP33076 RNU7-61P-201ENST00000515897 61 ntBASIC0.69□□□□□ -2.3
CIITAP33076 Y_RNA.809-201ENST00000516058 95 ntBASIC0.69□□□□□ -2.3
CIITAP33076 RNU6-158P-201ENST00000517104 100 ntBASIC0.69□□□□□ -2.3
CIITAP33076 RNU7-161P-201ENST00000517289 62 ntBASIC0.69□□□□□ -2.3
CIITAP33076 AC103810.7-201ENST00000607821 91 ntBASIC0.69□□□□□ -2.3
CIITAP33076 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.69□□□□□ -2.3
CIITAP33076 Y_RNA.107-201ENST00000363190 121 ntBASIC0.68□□□□□ -2.3
CIITAP33076 RNU4-45P-201ENST00000365469 141 ntBASIC0.68□□□□□ -2.3
CIITAP33076 Y_RNA.544-201ENST00000384650 113 ntBASIC0.68□□□□□ -2.3
CIITAP33076 RNU6-1254P-201ENST00000391266 104 ntBASIC0.68□□□□□ -2.3
CIITAP33076 RNA5SP94-201ENST00000516917 108 ntBASIC0.68□□□□□ -2.3
CIITAP33076 RNA5SP47-201ENST00000517230 109 ntBASIC0.68□□□□□ -2.3
CIITAP33076 RNA5SP403-201ENST00000363598 108 ntBASIC0.67□□□□□ -2.3
CIITAP33076 RNU6-640P-201ENST00000363693 105 ntBASIC0.67□□□□□ -2.3
CIITAP33076 RNU6-32P-201ENST00000383948 107 ntBASIC0.67□□□□□ -2.3
CIITAP33076 Y_RNA.433-201ENST00000384089 102 ntBASIC0.67□□□□□ -2.3
CIITAP33076 RNU6-13P-201ENST00000384248 107 ntBASIC0.67□□□□□ -2.3
CIITAP33076 RNU6-905P-201ENST00000384434 107 ntBASIC0.67□□□□□ -2.3
CIITAP33076 RNU6-12P-201ENST00000384604 107 ntBASIC0.67□□□□□ -2.3
CIITAP33076 RNU6-41P-201ENST00000384741 107 ntBASIC0.67□□□□□ -2.3
CIITAP33076 MIR936-201ENST00000401264 98 ntBASIC0.67□□□□□ -2.3
CIITAP33076 RNA5SP121-201ENST00000516537 101 ntBASIC0.67□□□□□ -2.3
CIITAP33076 AL513043.2-201ENST00000573941 143 ntBASIC0.67□□□□□ -2.3
CIITAP33076 RNA5SP347-201ENST00000362445 119 ntBASIC0.66□□□□□ -2.3
CIITAP33076 SNORD115-24-201ENST00000363528 82 ntBASIC0.66□□□□□ -2.3
CIITAP33076 RNU6-1125P-201ENST00000363601 107 ntBASIC0.66□□□□□ -2.3
CIITAP33076 Y_RNA.221-201ENST00000364248 96 ntBASIC0.66□□□□□ -2.3
CIITAP33076 RNU6-480P-201ENST00000384332 107 ntBASIC0.66□□□□□ -2.3
CIITAP33076 RNA5SP89-201ENST00000410300 108 ntBASIC0.66□□□□□ -2.3
CIITAP33076 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.66□□□□□ -2.3
CIITAP33076 MIR4639-201ENST00000584938 69 ntBASIC0.66□□□□□ -2.3
CIITAP33076 MIR8087-201ENST00000612745 78 ntBASIC0.66□□□□□ -2.3
CIITAP33076 AC244669.1-204ENST00000621564 178 ntBASIC0.66□□□□□ -2.3
CIITAP33076 MIR6828-201ENST00000636181 60 ntBASIC0.66□□□□□ -2.3
CIITAP33076 RNA5SP499-201ENST00000363982 119 ntBASIC0.65□□□□□ -2.31
CIITAP33076 SNORA36.2-201ENST00000384004 127 ntBASIC0.65□□□□□ -2.31
CIITAP33076 MIR140-201ENST00000385282 100 ntBASIC0.65□□□□□ -2.31
CIITAP33076 AL161932.1-201ENST00000437408 146 ntBASIC0.65□□□□□ -2.31
CIITAP33076 RNU6-168P-201ENST00000516189 101 ntBASIC0.65□□□□□ -2.31
CIITAP33076 RNU6-1265P-201ENST00000516342 103 ntBASIC0.65□□□□□ -2.31
CIITAP33076 RNU6-135P-201ENST00000516769 101 ntBASIC0.65□□□□□ -2.31
CIITAP33076 AC018659.1-201ENST00000551083 169 ntBASIC0.65□□□□□ -2.31
CIITAP33076 AL109933.3-201ENST00000619095 188 ntBASIC0.65□□□□□ -2.31
CIITAP33076 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
CIITAP33076 RNA5SP257-201ENST00000363023 116 ntBASIC0.64□□□□□ -2.31
CIITAP33076 SNORD58A-201ENST00000383875 65 ntBASIC0.64□□□□□ -2.31
CIITAP33076 RNU6-524P-201ENST00000384270 107 ntBASIC0.64□□□□□ -2.31
CIITAP33076 RNU6-887P-201ENST00000410660 100 ntBASIC0.64□□□□□ -2.31
CIITAP33076 snoU13.11-201ENST00000459219 104 ntBASIC0.64□□□□□ -2.31
CIITAP33076 RNU6-469P-201ENST00000516253 101 ntBASIC0.64□□□□□ -2.31
CIITAP33076 Y_RNA.705-201ENST00000516862 110 ntBASIC0.64□□□□□ -2.31
CIITAP33076 RNA5SP330-201ENST00000517096 96 ntBASIC0.64□□□□□ -2.31
CIITAP33076 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.64□□□□□ -2.31
CIITAP33076 MIR5087-201ENST00000635826 76 ntBASIC0.64□□□□□ -2.31
CIITAP33076 MIR330-201ENST00000362196 94 ntBASIC0.63□□□□□ -2.31
CIITAP33076 RNU6-957P-201ENST00000363652 99 ntBASIC0.63□□□□□ -2.31
CIITAP33076 RNA5SP517-201ENST00000364724 117 ntBASIC0.63□□□□□ -2.31
CIITAP33076 RNU6-716P-201ENST00000365621 103 ntBASIC0.63□□□□□ -2.31
CIITAP33076 RNU6-243P-201ENST00000391140 107 ntBASIC0.63□□□□□ -2.31
CIITAP33076 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.63□□□□□ -2.31
CIITAP33076 SCARNA16.5-201ENST00000517114 183 ntBASIC0.63□□□□□ -2.31
CIITAP33076 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.63□□□□□ -2.31
CIITAP33076 U7.3-201ENST00000616123 62 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 187.4 ms