Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 Y_RNA.182-201ENST00000363880 111 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 Y_RNA.505-201ENST00000384489 102 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 RNU6-875P-201ENST00000516488 106 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 RNY4P20-201ENST00000516678 93 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 MIR4696-201ENST00000581431 70 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 MIR8068-201ENST00000618032 68 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-275P-201ENST00000364910 107 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-1009P-201ENST00000390996 107 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-466P-201ENST00000391224 103 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-935P-201ENST00000410371 100 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 HAR1A.1-201ENST00000459583 118 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-762P-201ENST00000517107 102 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 AC139792.2-201ENST00000624218 587 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.64□□□□□ -2.67
LIMS3P0CW19 Y_RNA.527-201ENST00000384573 102 ntBASIC-1.64□□□□□ -2.67
LIMS3P0CW19 RNU6-768P-201ENST00000384683 107 ntBASIC-1.64□□□□□ -2.67
LIMS3P0CW19 Y_RNA.158-201ENST00000363651 101 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 Y_RNA.292-201ENST00000364904 97 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 RNU6-54P-201ENST00000365563 107 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 AC097510.1-201ENST00000510945 133 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 RNU7-6P-201ENST00000516845 62 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 RNU6-235P-201ENST00000362644 107 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 SNORD115-19-201ENST00000363098 82 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 SNORD115-18-201ENST00000363293 82 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 SNORD115-17-201ENST00000364612 82 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 SNORD18B-201ENST00000365659 72 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 RNU6-493P-201ENST00000391321 108 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 RNA5SP266-201ENST00000410273 108 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 RNU6-592P-201ENST00000411333 103 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 AL353813.1-201ENST00000440700 253 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 MTND1P19-201ENST00000511780 315 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 RNY3P16-201ENST00000516338 101 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 Y_RNA.431-201ENST00000384086 102 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 SNORA75.5-201ENST00000391291 81 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 RBMX2P4-201ENST00000441256 376 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 Y_RNA.651-201ENST00000459380 103 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 SNORD18.2-201ENST00000459604 70 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 MIR4795-201ENST00000584182 89 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 AL137067.1-201ENST00000615933 120 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 RNU6-905P-201ENST00000384434 107 ntBASIC-1.68□□□□□ -2.68
LIMS3P0CW19 RNU6-706P-201ENST00000517229 104 ntBASIC-1.68□□□□□ -2.68
LIMS3P0CW19 RNU6-90P-201ENST00000606352 106 ntBASIC-1.68□□□□□ -2.68
LIMS3P0CW19 Y_RNA.153-201ENST00000363615 91 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 U3.27-201ENST00000391237 200 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 MIR3149-201ENST00000584629 83 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 Y_RNA.773-201ENST00000607168 90 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 MIR6773-201ENST00000612812 74 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.7□□□□□ -2.68
LIMS3P0CW19 MIR451A-201ENST00000385059 72 ntBASIC-1.71□□□□□ -2.68
LIMS3P0CW19 MIR548G-201ENST00000408442 89 ntBASIC-1.71□□□□□ -2.68
LIMS3P0CW19 MIR4643-201ENST00000577473 78 ntBASIC-1.71□□□□□ -2.68
LIMS3P0CW19 MIR3163-201ENST00000581592 73 ntBASIC-1.71□□□□□ -2.68
LIMS3P0CW19 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 Y_RNA.83-201ENST00000363005 113 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 SNORD38.1-201ENST00000363863 68 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 SNORD115-23-201ENST00000364461 82 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 RNU6-713P-201ENST00000384761 107 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 RNU6-1006P-201ENST00000516998 103 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 snoU83B.1-201ENST00000517136 88 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 RNU4-40P-201ENST00000364351 143 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 Y_RNA.352-201ENST00000365439 102 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 MIRLET7B-201ENST00000385140 83 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 MIR4680-201ENST00000580906 66 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 U6.106-201ENST00000636360 105 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 MIR6844-201ENST00000637122 62 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 U6.104-201ENST00000637979 90 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 RNU6-474P-201ENST00000384243 107 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-1.74□□□□□ -2.69
LIMS3P0CW19 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.74□□□□□ -2.69
LIMS3P0CW19 RNA5SP461-201ENST00000516451 104 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 Y_RNA.690-201ENST00000516603 95 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 AP002392.1-201ENST00000537692 208 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 AL512310.12-203ENST00000640543 90 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 RNU6-1313P-201ENST00000362622 102 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 RNU6-508P-201ENST00000363231 103 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 RNU6-309P-201ENST00000364573 106 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.337-201ENST00000365312 102 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 SNORA62.4-201ENST00000365504 151 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.619-201ENST00000410951 90 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 SNORD42B-201ENST00000458893 67 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 AC107027.2-201ENST00000512197 115 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 MIR4308-201ENST00000580634 81 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 AC138207.3-201ENST00000585289 166 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 SNORA63.6-201ENST00000364921 119 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 RNY4P28-201ENST00000365281 93 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 Y_RNA.419-201ENST00000384041 102 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 RNU6-588P-201ENST00000410281 105 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 SNORA7.5-201ENST00000410672 110 ntBASIC-1.76□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 185.2 ms